Repositories list

• bioruby-mcp-server

  Public
  Ruby

  •

  BSD 2-Clause "Simplified" License

  •0•0•0•0•Updated Sep 19, 2025Sep 19, 2025

• bioruby

  Public
  bioruby

  Ruby

  •

  Other

  •107•379•11•4•Updated Sep 19, 2025Sep 19, 2025

• bioruby.github.io

  Public
  HTML

  •1•0•0•0•Updated Mar 8, 2025Mar 8, 2025

• bioruby-shell

  Public
  BioRuby Shell: Interactive command line interface for BioRuby

  Ruby

  •

  Other

  •1•1•0•0•Updated Nov 8, 2021Nov 8, 2021

• staged-recipes

  Public
  A place to submit conda recipes before they become fully fledged conda-forge feedstocks

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •5.5k•0•0•0•Updated Sep 4, 2019Sep 4, 2019

• documents

  Public
  Executable BioRuby documents with rubydown and Jupyter Notebook

  HTML

  •0•6•1•0•Updated Sep 2, 2019Sep 2, 2019

• bioruby-blast-xmlparser

  Public
  BioRuby BLAST XMLParser Plugin

  Ruby

  •

  Other

  •0•0•0•0•Updated Jun 14, 2019Jun 14, 2019

• bioruby-executables

  Public
  Ruby

  •

  Other

  •0•1•0•0•Updated Jun 14, 2019Jun 14, 2019

• bioruby-notebooks

  Public
  IRuby Notebooks for BioRuby

  Jupyter Notebook

  •1•0•0•0•Updated Jun 25, 2016Jun 25, 2016

• bioruby-biosql

  Public
  BioSQL support of BioRuby

  Ruby

  •

  Other

  •0•0•0•0•Updated Jun 17, 2016Jun 17, 2016

• bioruby-phyloxml

  Public
  phyloXML support for Ruby

  Ruby

  •

  Other

  •0•0•0•0•Updated Jun 15, 2016Jun 15, 2016

• bioruby.org-webpage

  Public
  web pages for bioruby.org

  HTML

  •1•1•0•0•Updated Jul 2, 2015Jul 2, 2015

• biogems.info

  Public
  Tools for keeping track of biogems

  Ruby

  •13•1•0•0•Updated Dec 30, 2013Dec 30, 2013

• NA-BioRuby.org

  Public
  New age BioRuby website

  Ruby

  •2•1•0•0•Updated Mar 22, 2012Mar 22, 2012