Repositories list

• nf_genomics_pipelines

  Public

  biodata-fun/nf_genomics_pipelines’s past year of commit activity
  This repo contains pipeline implemented using the nextflow workflow management system for the analysis of genomics data

  coveragegenomicsanalysis+ 6bamnextflow-pipelinesgenomics-datacram-filesnextflow-workflow-managementnf-genomics-pipelines

  Nextflow

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  Apache License 2.0

  •1•2•0•0•Updated Sep 12, 2021Sep 12, 2021

• fasta_parser

  Public

  biodata-fun/fasta_parser’s past year of commit activity
  Small package used to parse a file in the Fasta format

  dnafasta-formatfasta-parser

  C++

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  Apache License 2.0

  •0•2•0•0•Updated Mar 30, 2021Mar 30, 2021

• CPP

  Public

  biodata-fun/CPP’s past year of commit activity
  This repo contains CPP scripts to perform certain tasks

  cmakegenomicsvcf+ 2cmakelistswig

  C++

  •0•2•0•0•Updated Mar 28, 2021Mar 28, 2021

• R_scripts

  Public
  Collection of simple R scripts to analyse genomic data

  R

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  Apache License 2.0

  •0•1•0•0•Updated Jan 29, 2021Jan 29, 2021

• course_material

  Public
  This directory contains material that I've used in different courses

  tutorialgenomicsvariant-calling+ 3bcftoolsfreebayesnextflow-pipelines

  Apache License 2.0

  •0•1•0•0•Updated Jan 13, 2021Jan 13, 2021

• htslib_howto

  Public

  biodata-fun/htslib_howto’s past year of commit activity
  Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point for more complex scripts

  cbam-filessam+ 6htslibgenomic-data-analysisvcf-filesfastq-filessam-filescram-files

  C

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  Apache License 2.0

  •1•11•0•0•Updated Dec 11, 2020Dec 11, 2020

• Variation_studies

  Public
  This repo contains code and notebooks relevant for the analysis of genomic variation data

  Jupyter Notebook

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  Apache License 2.0

  •0•1•0•0•Updated Apr 17, 2019Apr 17, 2019