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    7 repositories

    • AnaCore

      Public
      Libraries for managing standard file formats and objects from NGS
      bioinformaticspython-library
      Python
      •
      GNU General Public License v3.0
      •2•4•0•1•Updated Jul 30, 2025Jul 30, 2025

    • snake-basket

      Public
      Customisable rules for snakemake.
      snakemake
      Python
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated May 30, 2025May 30, 2025

    • SoFuR

      Public
      Worflow to detect, annotate, filter and vizualize somatic fusions from stranded paired-end RNA-seq from Illumina instruments.
      bioinformaticsrna-seqfusionsomatic-fusion-genes
      HTML
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated May 12, 2025May 12, 2025

    • AnaCore-utils

      Public
      Scripts for easily process NGS data from medical centers.
      Python
      •
      GNU General Public License v3.0
      •1•3•0•2•Updated Jan 12, 2025Jan 12, 2025

    • MInITI

      Public
      Detecting microsatellites instability by high throughput sequencing.
      machine-learningngsmsi
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 9, 2024Jun 9, 2024

    • zfq

      Public
      FastQ file compressor.
      bioinformaticscompressionfastq
      Python
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Jan 30, 2024Jan 30, 2024

    • miams

      Public
      Workflow for detecting microsatellite instability by next-generation sequencing on amplicons.
      JavaScript
      •1•2•1•0•Updated May 16, 2020May 16, 2020