Skip to content

@bhklab BHKLAB

Change the repository type filter

All

    Repositories list

    216 repositories

    • Xeva

      Public
      XEnograft Visualization & Analysis
      R
      •5•11•6•0•Updated Oct 18, 2025Oct 18, 2025

    • readii_2_roqc

      Public
      Jupyter Notebook
      •0•0•2•1•Updated Oct 17, 2025Oct 17, 2025

    • med-imagetools

      Public
      Transparent and reproducible medical image processing pipelines in Python.
      pythonmachine-learningdeep-learningdicomtorchpytorchmedicalnrrdnifti
      Python
      •
      MIT License
      •10•50•32•3•Updated Oct 17, 2025Oct 17, 2025

    • conformal-ffs

      Public
      Feature selection to find an optimal subset of features
      Jupyter Notebook
      •0•0•0•1•Updated Oct 10, 2025Oct 10, 2025

    • recist-vs-reality

      Public
      Development of the AI-Augmented RECIST Pipeline
      Jupyter Notebook
      •0•0•0•2•Updated Oct 9, 2025Oct 9, 2025

    • ORCESTRA

      Public
      ORCESTRA is a new web application that enables users to search, request and manage pharmacogenomic datasets (PSets).
      JavaScript
      •
      Apache License 2.0
      •2•5•24•8•Updated Oct 8, 2025Oct 8, 2025

    • damply

      Public
      Data Management Plan made simple
      Python
      •0•0•3•1•Updated Oct 8, 2025Oct 8, 2025

    • BrachyMMINTS

      Public
      0•0•0•0•Updated Oct 2, 2025Oct 2, 2025

    • PharmacoGx

      Public
      R package to analyze large-scale pharmacogenomic datasets.
      datasetspharmacogxpharmacogenomic
      R
      •
      GNU General Public License v3.0
      •26•71•74•3•Updated Oct 1, 2025Oct 1, 2025

    • science-portal-mailing

      Public
      Python
      •0•0•0•2•Updated Sep 29, 2025Sep 29, 2025

    • sarc-pgx-biomarker

      Public
      Biomarker Discovery in Soft Tissue Sarcoma Using Pharmacogenomics Data
      R
      •0•0•0•0•Updated Sep 26, 2025Sep 26, 2025

    • handbook

      Public
      Lab Handbook For BHKLab
      0•4•44•14•Updated Sep 26, 2025Sep 26, 2025

    • clinical-trial-eligibility-scraper

      Public
      A script used to scrape clinicaltrials.gov elegibility criteria based on the version of the trial needed. This is not acessible through their API, so a novel method had to be created.
      Python
      •0•0•0•0•Updated Sep 25, 2025Sep 25, 2025

    • readii

      Public
      Radiomic Extraction and Analysis for DICOM Images (READII)
      Jupyter Notebook
      •
      MIT License
      •0•5•29•2•Updated Sep 24, 2025Sep 24, 2025

    • readii-fmcib

      Public
      Taming the unicorn that is FMCIB
      Python
      •
      MIT License
      •0•2•1•0•Updated Sep 22, 2025Sep 22, 2025

    • PredictioR

      Public
      An R Package for Biomarker Discovery in Immuno-Oncology Therapy Response
      HTML
      •
      MIT License
      •0•0•0•0•Updated Sep 17, 2025Sep 17, 2025

    • SignatureSets

      Public
      Compendium of published molecular signatures
      HTML
      •
      MIT License
      •0•0•0•0•Updated Sep 17, 2025Sep 17, 2025

    • PredictIO-UV-Dist

      Public
      Distributed univariable predictive modelling for Immuno-Oncology response
      R
      •0•0•25•1•Updated Sep 12, 2025Sep 12, 2025

    • XevaDB

      Public
      XevaDB is a database for PDX pharmacogenomic data.
      pdxpatientderivedxenografts
      JavaScript
      •0•1•14•0•Updated Sep 12, 2025Sep 12, 2025

    • XevaDI

      Public
      The XevaDI is a python package that transforms the CSV files from the Xeva set to create the database table for XevaDB.
      Python
      •0•0•0•0•Updated Sep 12, 2025Sep 12, 2025

    • synthLethal

      Public
      R
      •
      Other
      •0•0•0•0•Updated Sep 2, 2025Sep 2, 2025

    • nbia-toolkit

      Public
      Python package for programmatic access to the National Biomedical Imaging Archive (NBIA) and The Cancer Imaging Archive (TCIA)
      dicomapi-clientsorting-algorithmsdicom-imagesoauth2-clientmedical-informaticstcia-dacidctciamedical-imaging-datasets
      Python
      •
      MIT License
      •1•10•6•1•Updated Aug 26, 2025Aug 26, 2025

    • med-imagenet

      Public
      Med-ImageNet processing scripts via Med-ImageTools AutoPipeline
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Aug 26, 2025Aug 26, 2025

    • CoreGx

      Public
      Shared code for both PharmacoGx and RadioGx
      pharmacogx-backendradiogxpharmacogxtoxicogx
      R
      •
      GNU General Public License v3.0
      •3•2•11•0•Updated Aug 25, 2025Aug 25, 2025

    • query_papers

      Public
      Simple PubMed Query Runner
      Python
      •0•0•0•0•Updated Aug 21, 2025Aug 21, 2025

    • clinical-data-mapping

      Public
      Clinical data mapping is a project to standardize the Cancer Imaging Archive (TCIA) clinical data
      Jupyter Notebook
      •0•0•0•1•Updated Aug 13, 2025Aug 13, 2025

    • pset-viability-curve-outlier-detection-by-tissue

      Public
      R
      •0•0•0•0•Updated Aug 12, 2025Aug 12, 2025

    • summarize-replicates-possible-solution

      Public
      R
      •0•0•0•0•Updated Aug 11, 2025Aug 11, 2025

    • pyradiomics-fork

      Public
      [FORK] Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Support: https://discourse.slicer.org/c/community/radiomics
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •531•0•0•0•Updated Jul 31, 2025Jul 31, 2025

    • MetaGxOvarian

      Public
      R
      •2•1•0•0•Updated Jul 30, 2025Jul 30, 2025