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    35 repositories

    • hadaca3_framework

      Public
      R
      •0•0•0•0•Updated Aug 8, 2025Aug 8, 2025

    • pcadapt

      Public
      Performing highly efficient genome scans for local adaptation with R package pcadapt v4
      R
      •10•42•0•0•Updated Jul 25, 2025Jul 25, 2025

    • DeconvBenchmark

      Public
      R
      •
      MIT License
      •0•1•0•0•Updated Jul 24, 2025Jul 24, 2025

    • SSMPG2025

      Public
      Resources for Software and Statistical Methods for Population Genetics 2025 (SSMPG 2025)
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 2, 2025Jul 2, 2025

    • hadaca3

      Public
      R
      •2•0•20•0•Updated Jun 19, 2025Jun 19, 2025

    • hdmax2

      Public
      High dimensional mediation analysis with max-squared tests
      R
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Mar 13, 2025Mar 13, 2025

    • LEA

      Public
      C
      •7•11•0•0•Updated Mar 11, 2025Mar 11, 2025

    • gedepir

      Public
      Gene Expression DEconvolution PIpeline in R
      HTML
      •0•1•0•0•Updated Dec 11, 2024Dec 11, 2024

    • geneticgap

      Public
      Repository related to "A quantitative theory for genomic offset statistics"
      HTML
      •0•5•0•0•Updated Jun 12, 2024Jun 12, 2024

    • penda

      Public
      PenDA is a rank-based method for personalized differential analysis.
      bioinformaticsgenomicsrnaseqbioinformatics-tooldifferential-analysis
      R
      •4•7•0•0•Updated Mar 27, 2024Mar 27, 2024

    • tuto-ssh

      Public
      How to work on BCM servers (krakenator, luxor) from home?
      0•2•0•0•Updated Jan 31, 2024Jan 31, 2024

    • dmprocr

      Public
      An R package that performs differential methylation profiles clustering.
      R
      •2•0•0•0•Updated Jul 6, 2023Jul 6, 2023

    • TESS3_encho_sen

      Public
      TESS3 is a fast and efficient program for estimating spatial population structure based on geographically constrained non-negative matrix factorization and population genetics.
      R
      •
      GNU General Public License v3.0
      •6•20•9•0•Updated Jun 21, 2023Jun 21, 2023

    • Loter

      Public
      A software package for local ancestry inference and haplotype phasing
      C++
      •
      Other
      •7•40•3•0•Updated Apr 20, 2023Apr 20, 2023

    • SSMPG2022

      Public
      Resources for Software and Statistical Methods for Population Genetics (SSMPG 2022)
      HTML
      •6•6•0•0•Updated Sep 28, 2022Sep 28, 2022

    • HDMAX2_Simulation_Scripts

      Public
      Scripts reproducing results presented in High Dimensional Mediation Analysis: a new method applied to maternal smoking, placental DNA methylation and birth outcomes (Jumentier et al. 2022)
      HTML
      •0•0•0•0•Updated Sep 13, 2022Sep 13, 2022

    • Ritmic

      Public
      R
      •0•0•0•0•Updated Jun 8, 2022Jun 8, 2022

    • LEA3_simulation_script

      Public
      Scripts and data sets reproducing the results presented in (Gain & François, 2020)
      R
      •
      GNU General Public License v3.0
      •2•1•0•0•Updated Oct 29, 2021Oct 29, 2021

    • scripts_sagmb

      Public
      R scripts for Jumentier et al. 2021
      R
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Aug 22, 2021Aug 22, 2021

    • spectralfst

      Public
      A package to compute values and matrices of interest described in the paper "A Spectral Theory for Wright’s Inbreeding Coefficients and Related Quantities" François et Gain 2020
      0•0•0•0•Updated May 11, 2021May 11, 2021

    • medepir

      Public
      MEthylation DEconvoluation PIpeline in R
      R
      •3•3•0•0•Updated Oct 15, 2020Oct 15, 2020

    • tfa

      Public
      Factor analysis of ancient DNA samples
      R
      •
      GNU General Public License v3.0
      •1•3•2•0•Updated Aug 27, 2020Aug 27, 2020

    • lfmm

      Public
      Fitting latent factor mixed models
      R
      •
      GNU General Public License v3.0
      •1•13•12•0•Updated Jun 12, 2020Jun 12, 2020

    • NaturalGWAS

      Public
      R package for the special issue "MER - Natural GWAS"
      HTML
      •1•3•0•0•Updated Dec 10, 2019Dec 10, 2019

    • bcm-uga.github.io

      Public
      Template for creating your website with R markdown.
      HTML
      •348•0•0•0•Updated Oct 10, 2019Oct 10, 2019

    • apTreeshape

      Public
      R
      •0•1•1•0•Updated Sep 25, 2019Sep 25, 2019

    • abc

      Public
      R package for Approximate Bayesian Computation
      R
      •1•0•1•0•Updated May 10, 2019May 10, 2019

    • isd

      Public
      Ressources pour les travaux pratiques d'introduction à la science des données
      R
      •0•0•0•0•Updated Jul 5, 2018Jul 5, 2018

    • dmprocrdata

      Public
      A set of data dedicated to the dmprocr R package.
      R
      •3•0•0•0•Updated May 23, 2018May 23, 2018

    • xgboostforabc

      Public
      R Scripts to perform ABC using xgboost
      HTML
      •0•0•0•0•Updated Feb 6, 2018Feb 6, 2018