Repositories list

• iggtree

  Public
  interactive ggtree with ggiraph

  R

  •

  GNU General Public License v3.0

  •0•3•0•0•Updated Aug 7, 2025Aug 7, 2025

• yulab-smu.github.io

  Public
  🏠 Homepage for YuLab-SMU

  HTML

  •5•12•0•0•Updated Jul 28, 2025Jul 28, 2025

• tidydr

  Public
  R

  •7•15•1•0•Updated Jul 25, 2025Jul 25, 2025

• ggtreeSpace

  Public
  🕸️Exploring phylomorphospace using 'ggtree'

  R

  •2•5•0•0•Updated Jul 24, 2025Jul 24, 2025

• enrichplot

  Public
  Visualization of Functional Enrichment Result

  visualizationpathway-analysisenrichment-analysis

  R

  •75•246•121•0•Updated Jul 16, 2025Jul 16, 2025

• ggfun

  Public
  useful functions for ggplot

  R

  •4•18•0•0•Updated Jul 16, 2025Jul 16, 2025

• ggmsa

  Public
  🚥 Visualizing publication-quality multiple sequence alignment using ggplot2

  R

  •24•212•47•0•Updated Jul 15, 2025Jul 15, 2025

• ggtree

  Public
  🎄Visualization and annotation of phylogenetic trees

  visualizationggplot2r+ 2annotationsphylogenetic-trees

  R

  •178•883•178•0•Updated Jul 13, 2025Jul 13, 2025

• ggtreeExtra

  Public
  🍋 Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”

  R

  •

  GNU General Public License v3.0

  •17•94•12•0•Updated Jul 2, 2025Jul 2, 2025

• aplot

  Public
  Decorate a plot with associated information

  R

  •16•108•10•0•Updated Jul 2, 2025Jul 2, 2025

• ggbreak

  Public
  💔 An implementation of scale functions for setting axis breaks of a 'gg' plot.

  ggplot2axis-breakwrap-plot+ 2cut-plotggbreak

  R

  •6•139•35•0•Updated Jul 2, 2025Jul 2, 2025

• ggsc

  Public
  🧠 Visualizing Single Cell and Spatial Transcriptomics

  R

  •12•49•0•0•Updated Jul 2, 2025Jul 2, 2025

• scatterpie

  Public
  🎨 scatter pie plot

  R

  •15•63•21•0•Updated Jul 2, 2025Jul 2, 2025

• MicrobiotaProcess

  Public
  🦠 A comprehensive R package for deep mining microbiome

  microbiomemicrobiome-analysismicrobiome-data+ 1rstats

  R

  •37•191•92•0•Updated Jul 1, 2025Jul 1, 2025

• ggtangle

  Public
  Draw Network with Data

  R

  •0•8•0•0•Updated Jun 30, 2025Jun 30, 2025

• scholar

  Public
  Analyse citation data from Google Scholar

  R

  •

  Other

  •81•46•1•0•Updated Jun 26, 2025Jun 26, 2025

• SVP

  Public
  R

  •

  GNU General Public License v3.0

  •0•9•0•0•Updated Jun 15, 2025Jun 15, 2025

• aplotExtra

  Public
  Creating composite plot using 'aplot'

  R

  •6•9•0•0•Updated Jun 12, 2025Jun 12, 2025

• tigeR

  Public
  🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package

  R

  •8•33•2•0•Updated Jun 5, 2025Jun 5, 2025

• sclet

  Public
  A Lightweight Toolkit for Single-Cell Data Analysis

  R

  •7•7•0•1•Updated Jun 2, 2025Jun 2, 2025

• ProjectYulab

  Public
  ⏭️ Small coding tasks that enable you to participate in our development

  3•33•20•0•Updated May 28, 2025May 28, 2025

• BMplot

  Public
  Base Modification Visualization

  R

  •4•4•0•0•Updated May 22, 2025May 22, 2025

• fanyi

  Public
  Translate Words or Sentences via Online Translators

  R

  •7•54•11•0•Updated May 8, 2025May 8, 2025

• TCMDATA

  Public
  R

  •2•3•0•1•Updated Apr 30, 2025Apr 30, 2025

• wikiprofiler

  Public
  R

  •4•5•0•1•Updated Apr 30, 2025Apr 30, 2025

• treeio

  Public
  🌱 Base Classes and Functions for Phylogenetic Tree Input and Output

  parserexporterphylogenetic-trees

  R

  •26•103•27•2•Updated Apr 17, 2025Apr 17, 2025

• seqcombo

  Public
  Visualization tool for genetic reassortment

  R

  •7•21•1•0•Updated Apr 17, 2025Apr 17, 2025

• meshes

  Public
  🩺 MeSH Enrichment and Semantic analyses

  semantic-similaritymedical-subject-headingsenrichment-analysis

  R

  •4•12•2•1•Updated Apr 17, 2025Apr 17, 2025

• ggtreeDendro

  Public
  Drawing 'dendrogram' using 'ggtree'

  clusteringdendrogram

  R

  •3•13•0•0•Updated Apr 17, 2025Apr 17, 2025

• clusterProfiler

  Public
  📊 A universal enrichment tool for interpreting omics data

  visualizationgorstats+ 3keggenrichment-analysisgsea

  R

  •262•1.1k•348•2•Updated Apr 17, 2025Apr 17, 2025