Repositories list

• workbench

  Public
  Connectome Workbench

  neurosciencemrinifti+ 3ciftigiftic-plus-plus

  C++

  •

  GNU General Public License v2.0

  •65•208•11•1•Updated Aug 19, 2025Aug 19, 2025

• HCPpipelines

  Public
  Processing pipelines for the HCP

  shellhcphcp-pipelines

  Shell

  •

  Other

  •279•597•17•8•Updated Aug 11, 2025Aug 11, 2025

• wb_shortcuts

  Public
  Script for common short wb_command sequences

  Shell

  •

  MIT License

  •0•2•0•0•Updated Jun 28, 2025Jun 28, 2025

• gradunwarp

  Public
  Gradient Unwarping in Python

  Python

  •

  Other

  •37•38•4•0•Updated Dec 23, 2024Dec 23, 2024

• cifti-matlab

  Public
  MATLAB code for reading and writing CIFTI connectivity files

  matlabciftihcp+ 2fmri-cifti-datacifti-format

  MATLAB

  •

  Other

  •20•67•2•0•Updated Oct 19, 2024Oct 19, 2024

• CiftiLib

  Public
  C++ Library for reading and writing CIFTI-2 and CIFTI-1 files

  c-plus-plusnifticifti+ 3hcpfmri-cifti-datacifti-format

  C++

  •

  BSD 2-Clause "Simplified" License

  •11•15•1•1•Updated Nov 28, 2023Nov 28, 2023

• BALSA

  Public
  JavaScript

  •0•0•0•0•Updated Oct 11, 2023Oct 11, 2023

• NHPPipelines

  Public
  Enhancements of HCP Pipelines for non-human primates

  Shell

  •

  Other

  •22•29•6•2•Updated Jul 7, 2022Jul 7, 2022

• HCPpipelinesXnatPbsJobs

  Public
  Shell

  •2•0•0•0•Updated Nov 13, 2020Nov 13, 2020

• StructuralQC

  Public
  Shell

  •

  Other

  •3•3•0•0•Updated Nov 2, 2020Nov 2, 2020

• CHPC_QuNex_RunUtils

  Public
  Scripts and parameters files for running Qu|Nex container on the CHPC

  Shell

  •

  BSD 2-Clause "Simplified" License

  •0•0•0•0•Updated May 15, 2020May 15, 2020

• HCPpipelinesXnatSingularity

  Public
  1•1•0•0•Updated May 15, 2020May 15, 2020

• HCPpipelinesRunUtils

  Public
  Utilities for running and checking completion status of HCP Pipelines

  Shell

  •1•1•0•0•Updated May 15, 2020May 15, 2020

• HCPpipelinesSingularity

  Public
  Files related to running the HCP Pipelines using Singularity

  Shell

  •

  Other

  •2•1•0•0•Updated Sep 30, 2019Sep 30, 2019

• HCPpipelinesDocker

  Public
  Files related to running the HCP Pipelines using Docker

  Other

  •3•3•1•0•Updated Mar 15, 2019Mar 15, 2019

• xnat_pbs_jobs_control

  Public
  Control files for the scripts in the xnat_pbs_jobs repository

  Shell

  •1•0•0•0•Updated Oct 31, 2018Oct 31, 2018

• xnat_pbs_jobs

  Public
  Scripts to run HCP Pipelines as XNAT aware PBS scheduled jobs

  Shell

  •1•1•0•0•Updated Oct 25, 2018Oct 25, 2018

• Pipeline_Environment_Setup_Scripts

  Public
  Shell

  •0•0•0•0•Updated Aug 3, 2018Aug 3, 2018

• at_cmd_utils

  Public
  Utility scripts for the at command

  Shell

  •0•0•0•0•Updated Aug 3, 2018Aug 3, 2018

• pbs_utils

  Public
  PBS Job Scheduler Utility Scripts

  Shell

  •0•0•0•0•Updated Aug 3, 2018Aug 3, 2018

• hcp_functional_qc_xnat_plugin

  Public
  XNAT pages required for HCP QC as a plugin

  Java

  •

  Other

  •0•0•0•0•Updated Mar 19, 2018Mar 19, 2018

• hcp_functional_qc_tools

  Public
  Python based scripts required for Functional QC Pipeline (aka Level2QC Pipeline) for HCP-IntraDB

  Python

  •0•0•0•0•Updated Feb 26, 2018Feb 26, 2018

• megconnectome

  Public
  MEG data processing pipelines for the HCP Young Adult project

  MATLAB

  •

  GNU General Public License v3.0

  •5•2•0•0•Updated Dec 7, 2017Dec 7, 2017

• xnat_utilities

  Public
  Some utilities for working with XNAT from the command line

  Python

  •0•2•0•0•Updated Jul 3, 2017Jul 3, 2017

• monitor-hcp-pipelines

  Public
  Python

  •1•1•0•0•Updated Aug 24, 2016Aug 24, 2016

• get-data-for-vetting

  Public
  Utility scripts to retrieve data from Connectome DB resources and place them in shared directories for examination and vetting

  Shell

  •0•0•0•0•Updated Jun 21, 2016Jun 21, 2016

• HCP

  Public
  Main HCP repo, probably mostly python stuff.

  Python

  •3•5•0•1•Updated Apr 6, 2016Apr 6, 2016

• HAWG-examples

  Public
  HAWG example JSON files

  9•0•0•0•Updated Feb 10, 2016Feb 10, 2016

• RetinotopySkeleton

  Public
  Shell

  •3•0•0•2•Updated Oct 5, 2015Oct 5, 2015

• hcp_functional_qc_pipeline_customizations

  Public
  HCP Functional QC (aka Level2QC) pipeline

  Shell

  •2•1•0•0•Updated Jun 24, 2015Jun 24, 2015