Repositories list

• rbootcamp

  Public
  R boot camp: Scientific Computing

  educationtutorialr+ 2simulationscientific-computing

  HTML

  •16•29•5•0•Updated Jul 31, 2025Jul 31, 2025

• PM566-bots

  Public
  1•0•0•0•Updated Jul 28, 2025Jul 28, 2025

• annoq-site

  Public
  TypeScript

  •2•0•18•1•Updated Jul 26, 2025Jul 26, 2025

• annoq-api-v2

  Public
  Jupyter Notebook

  •1•0•10•0•Updated Jul 26, 2025Jul 26, 2025

• annoq-data-builder

  Public
  Shell

  •0•0•3•0•Updated Jul 22, 2025Jul 22, 2025

• LAsBEST

  Public
  Repository of USC's LA's BEST program. https://lasbest.usc.edu/

  trainingeducationdatascience+ 4biostatisticsrstatsrprogrammingnih

  HTML

  •6•2•1•0•Updated Jul 21, 2025Jul 21, 2025

• annoq-api

  Public
  Python

  •0•0•0•0•Updated Jul 9, 2025Jul 9, 2025

• annoq-database

  Public
  Python

  •0•0•2•0•Updated Jul 9, 2025Jul 9, 2025

• barry

  Public
  barry: Your go-to motif accountant

  motifergmexponential-family+ 4graphenumerationcounting-statisticschange-statistics

  C++

  •

  MIT License

  •0•8•1•1•Updated Jul 3, 2025Jul 3, 2025

• fmcmc

  Public
  A friendly MCMC framework

  parallel-computingadaptivemcmc+ 5markov-chain-monte-carlometropolis-hastingsrbayesian-inferencer-package

  R

  •

  Other

  •7•16•8•1•Updated Jun 9, 2025Jun 9, 2025

• AnnoQR

  Public
  R client wrap for AnnoQ API

  R

  •

  MIT License

  •2•2•4•0•Updated May 28, 2025May 28, 2025

• PM516

  Public
  0•0•0•0•Updated May 14, 2025May 14, 2025

• Annoq_Overrepr_Workflow

  Public
  A workflow to query Annoq and run the overrepresentation

  TypeScript

  •1•0•1•0•Updated Apr 30, 2025Apr 30, 2025

• PM520

  Public
  PM520 Advanced Statistical Computing

  statistical-computingjax

  Jupyter Notebook

  •3•14•0•0•Updated Apr 18, 2025Apr 18, 2025

• dnam-roi

  Public
  MIT License

  •0•0•0•0•Updated Apr 18, 2025Apr 18, 2025

• SNP-to-Overrepresentation

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Apr 3, 2025Apr 3, 2025

• software-dev

  Public
  Coding Standards for the USC Biostats group

  rhpcreproducible-research+ 2standardsreproducibility

  HTML

  •8•36•0•1•Updated Mar 30, 2025Mar 30, 2025

• MRIreduce

  Public
  R

  •

  The Unlicense

  •2•0•0•1•Updated Jan 27, 2025Jan 27, 2025

• MethCon5

  Public
  Identify and rank CpG DNA methylation conservation along the human genome

  R

  •

  Other

  •0•0•0•0•Updated Jan 22, 2025Jan 22, 2025

• .github

  Public
  Will contain details for our organization's landing page

  0•0•0•0•Updated Jan 22, 2025Jan 22, 2025

• geese-simulations

  Public
  R

  •0•0•0•0•Updated Dec 13, 2024Dec 13, 2024

• PM566

  Public
  USC's Introduction to Health Data Science

  data-sciencemachine-learningcourse+ 5datavizcourse-materialsdatasciencerstatswebscraping

  HTML

  •27•14•15•0•Updated Dec 9, 2024Dec 9, 2024

• aphylo

  Public
  Statistical inference of genetic functions in phylogenetic trees

  rannotationsinference+ 3phylogeneticsr-packagercpparmadillo

  R

  •

  Other

  •2•6•8•1•Updated Dec 3, 2024Dec 3, 2024

• partition

  Public
  A fast and flexible framework for data reduction in R

  rdata-reductiondimensionality-reduction+ 1partitional-clustering

  HTML

  •

  Other

  •4•37•2•0•Updated Nov 10, 2024Nov 10, 2024

• SNPs-to-Genes_SnpEff-VEP-ANNOVAR

  Public
  R

  •

  MIT License

  •0•0•0•0•Updated Oct 24, 2024Oct 24, 2024

• GxEScanR

  Public
  R version of GxEScan

  R

  •2•8•3•1•Updated Oct 23, 2024Oct 23, 2024

• BinaryDosage

  Public
  Converts VCF files to a binary format

  R

  •2•1•2•0•Updated Sep 26, 2024Sep 26, 2024

• PM566-whoami

  Public
  132•0•0•0•Updated Sep 16, 2024Sep 16, 2024

• xrnet

  Public
  R Package for Hierarchical Regularized Regression to Incorporate External Data

  R

  •3•10•2•0•Updated Aug 9, 2024Aug 9, 2024

• cit

  Public
  C++

  •1•2•0•0•Updated Jun 27, 2024Jun 27, 2024