Turakhia Lab

All

11 repositories

SARS2_RecombinationAnalysis
Public
JavaScript
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MIT License
•0•1•0•0•Updated Nov 3, 2025Nov 3, 2025
rivet
Public
SARS-CoV-2 Recombination Viewer and Tracker
JavaScript
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MIT License
•1•6•3•0•Updated Oct 31, 2025Oct 31, 2025
TWILIGHT
Public
High throughput tool for tall and wide multiple sequence alignment.
bioinformatics snakemake cuda gpu-acceleration twilight multiple-sequence-alignment
C++
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MIT License
•1•19•0•0•Updated Oct 28, 2025Oct 28, 2025
DIPPER
Public
Distance-based Phylogenetic Placer
bioinformatics cpp cuda phylogenetics neighbor-joining placement divide-and-conquer dipper
Cuda
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MIT License
•1•14•0•0•Updated Oct 28, 2025Oct 28, 2025
WEPP
Public
Wastewater-Based Epidemiology using Phylogenetic Placements
phylogenetics wepp phylogenetic-placement maximum-parsimony sars-cov-2 pathogen-surveillance wastewater-based-epidemiology visual-dashboard wastewater-based-surveillance
C++
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MIT License
•0•13•1•0•Updated Oct 28, 2025Oct 28, 2025
metaWEPP
Public
Python
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MIT License
•0•2•0•0•Updated Oct 24, 2025Oct 24, 2025
panman
Public
Pangenome Mutation-Annotated Networks
bioinformatics cpp pangenomics panman evolutionary-compression panmanutils
C++
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MIT License
•6•15•0•1•Updated Oct 23, 2025Oct 23, 2025
TALCO
Public
C
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MIT License
•1•14•0•0•Updated Aug 16, 2025Aug 16, 2025
DP-HLS
Public
HLS-based framework to accelerate the implementation of 2-D DP kernels on FPGA
bioinformatics fpga hls dynamic-programming hardware-acceleration fpga-accelerator high-level-synthesis xilinx-vitis
C++
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MIT License
•2•11•0•0•Updated Jun 20, 2025Jun 20, 2025
ROADIES
Public
Tool for fully-automated inference of species trees from raw genome assemblies
python bioinformatics snakemake dna bioinformatics-pipeline phylogenetics
Python
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MIT License
•3•41•2•0•Updated May 27, 2025May 27, 2025
WFA2-lib
Public
WFA2-lib: Wavefront alignment algorithm library v2
C
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Other
•46•0•0•1•Updated Jun 7, 2023Jun 7, 2023