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    5 repositories

    • mutualinfobio

      Public
      This package contains a set of tools to calculate Mutual Information between proteins aminoacids from FASTA alignments.
      R
      •
      Other
      •0•0•0•0•Updated Apr 29, 2025Apr 29, 2025

    • RNAseq_2021Pyonema

      Public
      Code associated with Fischer, et al (2021) "Pyrolyzed Substrates Induce Aromatic Compound Metabolism in the Post-fire Fungus, Pyronema domesticum"
      rnaseqmetabolismfungicharcoal
      0•1•0•0•Updated Feb 22, 2023Feb 22, 2023

    • BlodgettProject

      Public
      Code associated with the following manuscript, currently in review: M.S. Fischer, N.J. Patel, P.J. De Lorimier, M.F. Traxler "Prescribed fire selects for a pyrophilous soil subcommunity in a northern California mixed conifer forest"
      community-ecologyamplicon-sequencingprescribedfireits-sequence16s-seq
      R
      •0•0•0•0•Updated Feb 22, 2023Feb 22, 2023

    • MS-DIALoutputDataFiltering_and_VennAnalysis

      Public
      R script for filtering the data output from MS-DIAL (i.e. remove features in blanks or extract controls), and then build and explore a presence/absence table for the features in each sample!
      R
      •0•0•0•0•Updated Sep 16, 2020Sep 16, 2020

    • ColonyPigmentationImageAnalysis

      Public
      Swift
      •0•1•0•1•Updated Sep 2, 2020Sep 2, 2020