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    264 repositories

    • nextflow-hpc-workshop

      Public
      Shell
      •8•0•8•1•Updated Oct 15, 2025Oct 15, 2025

    • intro-spatial-transcriptomics-workshop

      Public
      Intro to spatial transcriptomics workshop
      R
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Oct 15, 2025Oct 15, 2025

    • CuratedCollections

      Public
      ARDC CDL Curated Collections
      0•0•0•0•Updated Oct 15, 2025Oct 15, 2025

    • stats-resources

      Public
      SIH Statistics resources
      HTML
      •
      Other
      •4•7•0•0•Updated Oct 14, 2025Oct 14, 2025

    • usyd-gadi-onboarding-guide

      Public
      User guide for onboarding USyd users to NCI Gadi
      CSS
      •
      MIT License
      •0•3•4•0•Updated Oct 13, 2025Oct 13, 2025

    • dgx-cluster-onboarding-guide

      Public
      CSS
      •
      MIT License
      •0•0•0•0•Updated Oct 13, 2025Oct 13, 2025

    • usyd-pawsey-onboarding-guide

      Public
      User guide for onboarding USyd users to Pawsey Setonix
      CSS
      •
      MIT License
      •0•0•0•0•Updated Oct 10, 2025Oct 10, 2025

    • links

      Public
      Url shortener for Sydney Informatics Hub links
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Oct 8, 2025Oct 8, 2025

    • proteinfold

      Public
      Protein 3D structure prediction pipeline
      Nextflow
      •
      MIT License
      •59•0•0•0•Updated Oct 8, 2025Oct 8, 2025

    • PIPE-4779-Intracardiac-Electrograms

      Public
      Machine Learning for identifying ventricular scar.
      HTML
      •
      Apache License 2.0
      •0•0•5•0•Updated Oct 7, 2025Oct 7, 2025

    • riaf-health

      Public
      Research Impact AI Demonstrator for Medicine & Health
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 7, 2025Oct 7, 2025

    • index-reference-fasta-nf

      Public
      Create reference genome index files for WGS data analysis
      dockerworkflowbioinformaticspipelinegenomicsgenomenextflowsingularityindexfasta
      Nextflow
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 6, 2025Oct 6, 2025

    • HPC_usage_reports

      Public
      Scripts to pull resource usage data from job logs for Artemis and Gadi into tab-delimited format and to report queue time from job history
      nextflowhpcartemisgadinf-corenci-gadiusyd-artemis
      Perl
      •0•3•2•0•Updated Sep 25, 2025Sep 25, 2025

    • scrna-analysis

      Public
      A set of notebooks and scripts for analysing single cell RNA sequencing data.
      R
      •0•0•24•0•Updated Sep 24, 2025Sep 24, 2025

    • template-mkdocs

      Public template
      mkdocs template with USYD styling and automatic publishing to pages
      0•0•0•0•Updated Sep 24, 2025Sep 24, 2025

    • rocrate-tabular

      Public
      Python library for converting an RO-Crate to tabular representations
      HTML
      •3•2•34•0•Updated Sep 4, 2025Sep 4, 2025

    • ables

      Public
      Australian BioCommons Leadership Share (ABLeS) documentation
      HTML
      •11•0•0•0•Updated Aug 25, 2025Aug 25, 2025

    • ONT-bacpac-nf

      Public
      Bacterial profiling workflow for ONT data, written in Nextflow.
      Nextflow
      •
      GNU General Public License v3.0
      •0•2•23•1•Updated Aug 14, 2025Aug 14, 2025

    • hansard-rights-data-vis

      Public
      Data visualisation of UK Hansard data using Observable Framework
      JavaScript
      •0•0•0•0•Updated Aug 13, 2025Aug 13, 2025

    • hello-nextflow-2025

      Public
      Introduction to Nextflow training material 2025
      Shell
      •2•1•1•0•Updated Aug 11, 2025Aug 11, 2025

    • nci-su-calculator

      Public
      HTML
      •0•0•1•0•Updated Aug 5, 2025Aug 5, 2025

    • research-computing-tools

      Public
      0•0•0•0•Updated Aug 2, 2025Aug 2, 2025

    • Fastq-to-VCF

      Public
      High throughput illumina mammalian whole genome sequence analysis and joint genotyping
      Shell
      •0•0•2•0•Updated Jul 31, 2025Jul 31, 2025

    • tinycrate

      Public
      A tiny RO-Crate library in Python
      Python
      •1•1•9•1•Updated Jul 18, 2025Jul 18, 2025

    • RefCheckAI

      Public
      AI Reference Checker: Automated citation validation for AI-generated and academic content.
      0•0•0•0•Updated Jul 2, 2025Jul 2, 2025

    • tidbits

      Public
      SIH's "tech tidbits" blog for sharing useful tools and tips
      HTML
      •1•1•1•0•Updated Jun 30, 2025Jun 30, 2025

    • .github

      Public
      0•0•0•1•Updated Jun 26, 2025Jun 26, 2025

    • Bioinformatics

      Public
      A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common methods.
      bioinformaticssnpsgenomicsnextflowcancersomatic-variantsngsmetagenomicsbioinformatics-pipelinernaseq
      1•17•2•0•Updated Jun 26, 2025Jun 26, 2025

    • configs

      Public
      Config files used to define parameters specific to compute environments at different Institutions
      Nextflow
      •
      MIT License
      •332•0•0•0•Updated Jun 25, 2025Jun 25, 2025

    • ResearchPulseAI

      Public
      AI-driven Research Impact Assessment Tool and Case Study Generator for NSW Health
      0•0•0•0•Updated May 29, 2025May 29, 2025