Skip to content

@StanfordMIMI Stanford MIMI Lab

Change the repository type filter

All

    Repositories list

    23 repositories

    • Comp2Comp

      Public
      Computed tomography to body composition (Comp2Comp).
      segmentationcomputed-tomographybody-compositionabdominalabdomen-ct
      Python
      •
      Apache License 2.0
      •21•92•27•2•Updated Aug 15, 2025Aug 15, 2025

    • LieRE

      Public
      [ICML-2025] We introduce Lie group Relative position Encodings (LieRE) that goes beyond RoPE in supporting n-dimensional inputs.
      Python
      •
      MIT License
      •0•16•0•0•Updated Aug 13, 2025Aug 13, 2025

    • CheXalign

      Public
      [ACL-2025] CheXalign: Preference fine-tuning in chest X-ray interpretation models without human feedback
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Aug 3, 2025Aug 3, 2025

    • MedVAE

      Public
      [MIDL 2025] Efficient Automated Interpretation of Medical Images with Large-Scale Generalizable Autoencoders
      Python
      •
      MIT License
      •12•123•0•0•Updated Jul 16, 2025Jul 16, 2025

    • MedVAL

      Public
      MedVAL: Medical Text Validator
      Python
      •
      MIT License
      •0•12•0•0•Updated Jul 10, 2025Jul 10, 2025

    • clin-bhc-summ

      Public
      [JAMIA 2024] Official Implementation: "A dataset and benchmark for hospital course summarization with adapted large language models"
      text-summarizationlarge-language-models
      Jupyter Notebook
      •
      MIT License
      •2•7•0•0•Updated May 24, 2025May 24, 2025

    • Merlin

      Public
      Merlin is a 3D VLM for computed tomography that leverages both structured electronic health records (EHR) and unstructured radiology reports for pretraining.
      Python
      •
      MIT License
      •8•124•0•0•Updated Apr 28, 2025Apr 28, 2025

    • deep-feature-mr-recon

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •0•6•0•0•Updated Feb 10, 2025Feb 10, 2025

    • OpenCapBench

      Public
      Python
      •
      MIT License
      •4•26•2•0•Updated Jan 10, 2025Jan 10, 2025

    • RoentGen

      Public
      Python
      •5•62•1•0•Updated Aug 27, 2024Aug 27, 2024

    • clin-summ

      Public
      Clinical text summarization by adapting large language models
      Python
      •
      Other
      •31•149•3•0•Updated Jul 31, 2024Jul 31, 2024

    • nnUNet

      Public
      StanfordMIMI nnUNet
      Python
      •
      Apache License 2.0
      •2.1k•0•0•0•Updated May 4, 2024May 4, 2024

    • muscle_phewas

      Public
      Muscle CT metrics PheWAS
      R
      •
      MIT License
      •0•2•0•0•Updated Apr 17, 2024Apr 17, 2024

    • nnUNet_cust

      Public
      Python
      •
      Apache License 2.0
      •2.1k•0•0•0•Updated Apr 17, 2024Apr 17, 2024

    • TotalSegmentatorV2

      Public
      Tool for robust segmentation of >100 important anatomical structures in CT images
      Python
      •
      Apache License 2.0
      •343•19•0•0•Updated Apr 17, 2024Apr 17, 2024

    • SSL_IMU

      Public
      Python
      •0•9•0•0•Updated Jan 25, 2024Jan 25, 2024

    • DDM2

      Public
      [ICLR2023] Official repository of DDM2: Self-Supervised Diffusion MRI Denoising with Generative Diffusion Models
      diffusion-mriiclrdenoisingdiffusion-modelsiclr2023
      Python
      •23•176•29•0•Updated Jan 21, 2024Jan 21, 2024

    • RaLEs

      Public
      Radiology Language Evaluations
      Jupyter Notebook
      •
      Apache License 2.0
      •1•11•5•0•Updated Nov 17, 2023Nov 17, 2023

    • villa

      Public
      [ICCV 2023] ViLLA: Fine-grained vision-language representation learning from real-world data
      Python
      •
      MIT License
      •3•45•4•0•Updated Oct 15, 2023Oct 15, 2023

    • TotalSegmentator

      Public
      Tool for robust segmentation of 104 important anatomical structures in CT images
      Python
      •
      Apache License 2.0
      •343•1•0•0•Updated Oct 9, 2023Oct 9, 2023

    • siaug

      Public
      Repository for the paper "Exploring Image Augmentations for Siamese Representation Learning with Chest X-Rays"
      medical-imagingsiamese-networkdomain-specificchest-xraysaugmentations
      Python
      •
      MIT License
      •2•9•1•0•Updated Aug 29, 2023Aug 29, 2023

    • skm-tea

      Public
      Repository for the Stanford Knee MRI Multi-Task Evaluation (SKM-TEA) Dataset
      machine-learningcomputer-visionmriinverse-problems
      Python
      •
      MIT License
      •15•90•4•0•Updated May 28, 2023May 28, 2023

    • abct_ihd

      Public
      Code for IHD risk asessment from abdominopelvic CTs + EHR data
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Mar 15, 2023Mar 15, 2023