Repositories list

• bird-ringing

  Public
  Web-based interface and database for managing bird-ringing data

  Shell

  •

  MIT License

  •0•1•14•1•Updated Oct 16, 2025Oct 16, 2025

• data-submission-documentation

  Public
  Documentation for data submissions from life science research in public repositories

  Python

  •0•4•0•0•Updated Oct 16, 2025Oct 16, 2025

• SMS_8231

  Public
  HTML

  •0•0•0•0•Updated Oct 16, 2025Oct 16, 2025

• redmine_utils

  Public
  Various script used to manage Redmine.

  Python

  •0•0•0•0•Updated Oct 16, 2025Oct 16, 2025

• SCoRe_user_doc

  Public
  SCoRe user documentation

  documentationuserscore

  Shell

  •

  GNU General Public License v3.0

  •0•0•4•0•Updated Oct 16, 2025Oct 16, 2025

• bp-landing-pages

  Public
  Bigpicture project dataset landing page generator

  Go

  •0•0•0•8•Updated Oct 15, 2025Oct 15, 2025

• psc-atlas

  Public
  Dockerfile

  •

  MIT License

  •0•0•16•1•Updated Oct 15, 2025Oct 15, 2025

• urdr

  Public
  Timelogging system of NBIS

  TypeScript

  •

  GNU Affero General Public License v3.0

  •1•0•54•0•Updated Oct 15, 2025Oct 15, 2025

• assembly-project-template

  Public template
  This is a template for all assembly projects. Please read the instructions below on how to use it.

  project-templategenome-annotationgenome-analysis+ 1genome-assembly

  Shell

  •

  MIT License

  •2•3•5•0•Updated Oct 14, 2025Oct 14, 2025

• rda-gorc-im

  Public
  GORC International Model visualisation

  JavaScript

  •1•0•11•0•Updated Oct 14, 2025Oct 14, 2025

• Training-Tech-shorts

  Public
  Short lessons, training various Research Software Engineering tools useful to our work.

  terminalnextflowhpc+ 5vscodeconfluencetips-and-tricksresearch-software-engineeringquarto

  Markdown

  •14•9•50•2•Updated Oct 14, 2025Oct 14, 2025

• scirnaseq

  Public
  sciRNAseq3 pipeline

  Python

  •

  MIT License

  •0•2•1•0•Updated Oct 14, 2025Oct 14, 2025

• strobealign-evaluation

  Public
  Python

  •1•1•0•0•Updated Oct 14, 2025Oct 14, 2025

• bacmet

  Public
  TypeScript

  •0•0•2•0•Updated Oct 14, 2025Oct 14, 2025

• sdafs

  Public
  FUSE file system driver for the sensitive data archive with a CSI driver for use in Kubernetes

  Go

  •

  MIT License

  •0•0•0•1•Updated Oct 13, 2025Oct 13, 2025

• workshop-ngsintro

  Public
  Workshop • Intro to Bioinformatics using NGS data • 5 days

  bioinformaticsrnaseqvariant-calling+ 2unix-shellngs-analysis

  HTML

  •

  Other

  •7•16•0•0•Updated Oct 13, 2025Oct 13, 2025

• sda-uppmax-integration

  Public
  Go

  •0•0•0•1•Updated Oct 13, 2025Oct 13, 2025

• sda-cli

  Public
  User command line interface for the SDA

  Go

  •

  GNU Affero General Public License v3.0

  •1•6•33•3•Updated Oct 13, 2025Oct 13, 2025

• bp-sweden-web

  Public
  Website for BigPicture Sweden

  SCSS

  •

  MIT License

  •0•0•5•0•Updated Oct 13, 2025Oct 13, 2025

• lunch-menu

  Public template
  Go

  •

  MIT License

  •0•0•0•1•Updated Oct 10, 2025Oct 10, 2025

• workshop-reproducible-research

  Public
  NBIS/Elixir course: Tools for Reproducible Research

  HTML

  •

  Creative Commons Attribution 4.0 International

  •35•64•5•2•Updated Oct 9, 2025Oct 9, 2025

• Earth-Biogenome-Project-pilot

  Public
  An assembly workflow for analysing data in the Earth Biogenome Project pilot project.

  Nextflow

  •

  GNU General Public License v3.0

  •12•14•72•3•Updated Oct 8, 2025Oct 8, 2025

• PLP_Design_Portal

  Public
  This repository contains a package to create padlock probes that target RNA directly and for developing a user-friendly.portal

  0•0•6•1•Updated Oct 8, 2025Oct 8, 2025

• workshop-r

  Public
  Workshop • R Programming Foundations for Life Scientists • 5 days

  rworkshopr-programming+ 1life-scientists

  CSS

  •

  GNU General Public License v3.0

  •10•7•0•0•Updated Oct 7, 2025Oct 7, 2025

• aida-datahub-docs

  Public
  Documentation for AIDA datahub services

  0•0•1•2•Updated Oct 6, 2025Oct 6, 2025

• submitter

  Public
  Developer Tool for Big Picture Dataset Submissions

  Go

  •

  GNU Affero General Public License v3.0

  •0•0•0•1•Updated Oct 6, 2025Oct 6, 2025

• teaching_literature_club

  Public
  NBIS' teaching literature club

  clubmeetingteaching+ 4literaturepedagogytlcnbis

  Shell

  •

  GNU General Public License v3.0

  •1•1•0•0•Updated Sep 28, 2025Sep 28, 2025

• workshop-epigenomics-RTDs

  Public
  workshop website on readthedocs

  16•20•0•1•Updated Sep 26, 2025Sep 26, 2025

• fungal-trans

  Public
  A Snakemake workflow for fungal metatranscriptomics

  Python

  •

  MIT License

  •4•4•1•0•Updated Sep 26, 2025Sep 26, 2025

• bp-upload-test

  Public
  For showing results of the uploading tests to the Bigpicture staging

  HTML

  •

  MIT License

  •0•0•0•0•Updated Sep 26, 2025Sep 26, 2025