Multi-omics Network Analytics Group

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23 repositories

InstaNexus
Public
Python
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MIT License
•1•0•1•1•Updated Aug 6, 2025Aug 6, 2025
course_protein_language_modeling
Public
education machine-learning course slides protein-sequences
HTML
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Apache License 2.0
•10•37•0•0•Updated Aug 5, 2025Aug 5, 2025
acore
Public
Functionality to preprocess and analyse multi-omics data
analysis omics omics-data-integration preprocessing-data
Python
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Other
•0•0•13•1•Updated Jul 29, 2025Jul 29, 2025
Retrieve_info_MGnifyAPI
Public
Scripts to get information from MGnify programmatically using its API
Jupyter Notebook
•0•0•1•1•Updated Jul 25, 2025Jul 25, 2025
vuegen
Public
VueGen automates the creation of reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyter notebooks, and Streamlit web applications. Users simply provide a directory with output files and VueGen compiles them into a structured report.
python data-visualization reports developer-tools quarto streamlit bioinformatics-software
Python
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MIT License
•0•26•26•2•Updated Jul 23, 2025Jul 23, 2025
pubmed-rag
Public
A playground for RAG development from pubmed API
Jupyter Notebook
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MIT License
•1•4•0•0•Updated Jul 15, 2025Jul 15, 2025
vuecore
Public
Visualization library for omics data
python data-visualization developer-tools plotting omics bioinformatics-software
Python
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MIT License
•0•2•2•2•Updated Jul 14, 2025Jul 14, 2025
FermentDB
Public
FermentDB: A Database for High-cell Density Fermentations
Python
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GNU General Public License v3.0
•0•0•0•0•Updated Jun 19, 2025Jun 19, 2025
course_synthetic_biology_data
Public
Slides for lecture "Leveraging existing biological data and making sense of it" part of DTU's Summer School on Synthetic Biology for Cell Factories
education course slides
Apache License 2.0
•0•2•0•0•Updated Jun 17, 2025Jun 17, 2025
MetaProteomics
Public
Josefine's repo for special course on meta-proteomics
Python
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MIT License
•0•1•0•0•Updated Jun 4, 2025Jun 4, 2025
multiomics-analytics-group.github.io
Public
MoNA Group Website
HTML
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Other
•4k•1•0•0•Updated May 12, 2025May 12, 2025
nf-vuegen
Public
nf-core module designed to automate report generation from outputs produced by other modules, subworkflows, or pipelines. VueGen creates reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyter notebooks, and Streamlit web applications.
data-visualization reports developer-tools quarto nf-core streamlit nextflow-modules
Nextflow
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MIT License
•0•2•0•0•Updated Apr 11, 2025Apr 11, 2025
airbiome
Public
Scripts for the airbiome project
Jupyter Notebook
•0•0•0•0•Updated Apr 10, 2025Apr 10, 2025
MicW2Graph
Public
A knowledge graph of the wastewater treatment microbiome and its biological context
metagenomics knowledge-graph network-biology wastewater-treatment biolink-model streamlit-webapp
HTML
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MIT License
•0•4•0•0•Updated Apr 9, 2025Apr 9, 2025
ckg
Public
Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge discovery making use of all the information contained in the graph
Jupyter Notebook
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MIT License
•105•1•0•0•Updated Jan 21, 2025Jan 21, 2025
course_graph_machine_learning
Public
This is part of an AI course
Jupyter Notebook
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GNU General Public License v3.0
•1•1•0•0•Updated Jan 13, 2025Jan 13, 2025
networks_to_study_microbes
Public
education course slides notebooks-jupyter
Jupyter Notebook
•1•0•0•0•Updated Nov 21, 2024Nov 21, 2024
OrthoHPI2.0
Public
Jupyter Notebook
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MIT License
•0•0•0•0•Updated Jun 7, 2024Jun 7, 2024
MicW2Graph_network_inference_analysis
Public
A repository with scripts to infer and analyze microbial association networks for the MicW2Graph project
Python
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MIT License
•1•0•0•0•Updated Jun 4, 2024Jun 4, 2024
cfb_data_club
Public
0•0•0•0•Updated May 10, 2023May 10, 2023
orthohpi
Public
JavaScript
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MIT License
•0•0•0•0•Updated Aug 6, 2021Aug 6, 2021
PythonTsunami
Public
education course slides notebook-jupyter
Jupyter Notebook
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MIT License
•17•0•0•0•Updated Jun 9, 2021Jun 9, 2021
triqler
Public
The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
Python
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Apache License 2.0
•11•0•0•0•Updated May 4, 2020May 4, 2020