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    13 repositories

    • poli

      Public
      A library of discrete objectives
      Python
      •
      MIT License
      •1•21•55•5•Updated Jul 19, 2025Jul 19, 2025

    • HackathonEBM

      Public
      Jupyter Notebook
      •1•2•0•0•Updated Jun 17, 2025Jun 17, 2025

    • poli-baselines

      Public
      A collection of objective functions and black box optimization algorithms related to proteins and small molecules
      Python
      •
      MIT License
      •4•6•16•4•Updated Mar 3, 2025Mar 3, 2025

    • hdbo_benchmark

      Public
      Code for "A survey and benchmark of high-dimensional Bayesian optimization of discrete sequences"
      Python
      •0•12•3•1•Updated Feb 24, 2025Feb 24, 2025

    • poli-docs

      Public
      Documentation for poli and poli-baselines
      0•5•6•2•Updated Dec 22, 2024Dec 22, 2024

    • BEND

      Public
      Benchmarking DNA Language Models on Biologically Meaningful Tasks
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •17•1•1•0•Updated Oct 31, 2024Oct 31, 2024

    • poli-assets

      Public
      Assets and datasets for `poli` and `poli-baselines`
      0•0•0•0•Updated Sep 12, 2024Sep 12, 2024

    • protein_regression

      Public
      The codebase to replicate the analysis of "A systematic analysis of regression models for protein engineering" (2024).
      benchmarkmachine-learningcomputational-biologyuncertainty-quantification
      Jupyter Notebook
      •
      MIT License
      •2•4•0•0•Updated Jun 12, 2024Jun 12, 2024

    • corel

      Public
      Python
      •
      MIT License
      •1•3•4•0•Updated Apr 12, 2024Apr 12, 2024

    • stochman

      Public
      Algorithms for computations on random manifolds made easier
      pythonmachine-learningpytorchmanifoldriemannian-geometry
      Python
      •
      Apache License 2.0
      •10•91•10•0•Updated Dec 4, 2023Dec 4, 2023

    • .github

      Public
      0•1•0•0•Updated Aug 18, 2023Aug 18, 2023

    • meaningful-protein-representations

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •7•111•4•0•Updated Mar 7, 2022Mar 7, 2022

    • torchplot

      Public
      Plotting pytorch tensors made easy!
      Python
      •
      Apache License 2.0
      •1•15•0•0•Updated Jan 28, 2021Jan 28, 2021