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    10 repositories

    • corall_analysis

      Public
      Standard analysis routine for samples generated with Corall and Corall v2 library preparation kit.
      Shell
      •0•5•2•0•Updated Feb 6, 2025Feb 6, 2025

    • SIRVsuite

      Public
      SIRVsuite is a command line tool to QC an RNA-Seq workflow using Lexogen's SIRV spike-in controls.
      Python
      •
      Other
      •5•9•3•0•Updated Feb 5, 2025Feb 5, 2025

    • idemuxcpp

      Public
      iDemux is an all-in-one command line tool that can be used for both demultiplexing and error correction of FASTQ files. It enables demultiplexing of i1 inline barcodes of Lexogen’s QuantSeq-Pool as well as demultiplexing of i7 and/or i5 indices of any other RNA-Seq library prep. iDemux can also be used for superior error correction of RNA-Seq li…
      C++
      •
      Other
      •2•7•0•1•Updated Nov 14, 2024Nov 14, 2024

    • Fastq-Read-ID-Converter

      Public
      Python
      •0•0•0•0•Updated May 3, 2024May 3, 2024

    • pyranges

      Public
      Performant Pythonic GenomicRanges
      Python
      •
      MIT License
      •49•0•0•0•Updated Oct 11, 2023Oct 11, 2023

    • bamread

      Public
      Bam to Pandas DataFrame, quickly
      Cython
      •7•0•0•0•Updated Oct 11, 2023Oct 11, 2023

    • quantseqpool_analysis

      Public
      Standard analysis routine for samples that were generated with Lexogen's QuantSeq pool library preparation kit.
      rna-seq-pipelinequantseqquantseqpool
      Shell
      •3•9•3•0•Updated Oct 31, 2022Oct 31, 2022

    • idemux

      Public
      Idemux is a command line tool designed to demultiplex paired-end fastq files from QuantSeq-Pool.
      Python
      •
      Other
      •1•8•2•0•Updated May 4, 2022May 4, 2022

    • ARTIC_SARS-CoV-2

      Public
      Supplementary information for the Lexogen SARS-CoV2 ARTIC primer panel
      Shell
      •1•1•0•0•Updated Jul 8, 2021Jul 8, 2021

    • sars-cov-2_analysis

      Public
      An analysis script routine to assess if samples that were prepared with Lexogen's barcoded targeted QuantSeq Flex library preparation contain copies of the SARS-CoV-2 virus.
      rna-seq-pipelinecovid-19sars-cov-2
      Shell
      •0•0•0•0•Updated Dec 22, 2020Dec 22, 2020