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    18 repositories

    • THG_focus_engineering_2008

      Public
      Third-harmonic generation microscopy with focus-engineered beams: a numerical Study
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 6, 2025Aug 6, 2025

    • FDTD_Neurons

      Public
      Code for the simulations presented in the article "Multiscale characterization of myelin distribution with polarized THG microscopy"
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 27, 2025Jun 27, 2025

    • napari-proofread-brainbow

      Public
      napari plugin for proofreading brainbow prediction
      Python
      •
      MIT License
      •0•0•1•0•Updated Jun 23, 2025Jun 23, 2025

    • zarrdataset

      Public
      A dataset for loading zarr files to be used in machine learning training pipelines
      Python
      •
      MIT License
      •4•0•0•0•Updated May 30, 2025May 30, 2025

    • FitOCT-CMDStanPy

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 26, 2025May 26, 2025

    • napari-brainbow-diagnose

      Public
      Diagnoze brainbow image using napari
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•2•5•0•Updated Apr 13, 2025Apr 13, 2025

    • THG-folium

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Mar 10, 2025Mar 10, 2025

    • napari-swc-editor

      Public
      Use point and shape layer to edit swc format
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•8•0•Updated Feb 3, 2025Feb 3, 2025

    • napari-clusters-plotter

      Public
      A napari plugin for clustering objects according to their properties.
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •10•0•0•0•Updated Jan 30, 2025Jan 30, 2025

    • FLUTE

      Public
      Fluorescence Lifetime Ultimate Explorer (FLUTE) is a GUI for exploring and analyzing Fluorescence Lifetime Microscopy (FLIM) data
      visualizationmicroscopyphasorflim
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •7•27•2•2•Updated Dec 12, 2024Dec 12, 2024

    • napari-swc-reader

      Public
      A minimalist napari plugin to load swc file to napari viewer
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Nov 29, 2024Nov 29, 2024

    • nunet

      Public
      Repo for paper "NU-Net: a self-supervised smart filter for enhancing blobs in bioimages", BIC workshop, ICCV2023
      Python
      •0•2•0•0•Updated Dec 16, 2023Dec 16, 2023

    • bioimageloader

      Public
      Load bioimages for machine learning applications
      bioinformaticsbioimage-toolspythonmachine-learningdeep-learningdataset
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•7•2•0•Updated Feb 1, 2023Feb 1, 2023

    • THG_PIPETTES

      Public
      Matlab and lumerical code for THG simulations of cylindrical structures
      MATLAB
      •0•0•0•0•Updated Jan 5, 2023Jan 5, 2023

    • bioimageloader-docs

      Public
      docs for bioimageloader
      Jupyter Notebook
      •1•0•0•0•Updated Sep 16, 2022Sep 16, 2022

    • oscillator

      Public
      C++
      •0•0•0•0•Updated Jun 9, 2022Jun 9, 2022

    • STORM_Analysis

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Apr 7, 2022Apr 7, 2022

    • FDTD_for_NL_microscopy

      Public
      MATLAB
      •
      MIT License
      •1•0•0•0•Updated Apr 27, 2021Apr 27, 2021