Repositories list

• SDDS_particleSpike

  Public
  C++

  •

  MIT License

  •0•0•0•0•Updated Aug 14, 2025Aug 14, 2025

• micrologger_device

  Public
  Code, schematics, and documentation for the µLogger culturing device

  OpenSCAD

  •

  Other

  •0•0•4•0•Updated Jul 16, 2025Jul 16, 2025

• geoapps

  Public
  R

  •0•0•7•0•Updated Jul 2, 2025Jul 2, 2025

• LabLoggerLibs

  Public
  C++

  •

  MIT License

  •0•0•0•0•Updated May 26, 2025May 26, 2025

• kopflab.github.io

  Public
  SCSS

  •0•0•1•0•Updated May 8, 2025May 8, 2025

• 2021_asamoto_et_al

  Public
  Supplementary information for Asamoto et al. (2021). Enzyme-Specific Coupling of Oxygen and Nitrogen Isotope Fractionation of the Nap and Nar Nitrate Reductases.

  R

  •0•0•0•0•Updated Mar 24, 2025Mar 24, 2025

• micrologger_package

  Public
  R package to interact with µLogger culturing devices

  0•0•0•0•Updated Mar 14, 2025Mar 14, 2025

• 2025_keller_et_al

  Public
  R

  •0•0•0•0•Updated Feb 4, 2025Feb 4, 2025

• ggstackplot

  Public
  R package for stacked ggplots

  R

  •

  Other

  •0•9•4•0•Updated Jan 31, 2025Jan 31, 2025

• chemunits

  Public
  Chemical units built on the units package

  R

  •

  Other

  •0•0•4•0•Updated Jan 14, 2025Jan 14, 2025

• 2022_halamka_et_al

  Public
  R

  •0•0•0•0•Updated Sep 18, 2024Sep 18, 2024

• asamoto_etal_2024

  Public
  data for "Stable isotopic signature of dissimilatory nitrate reduction is robust against enzyme mutation"

  R

  •0•0•0•0•Updated Aug 7, 2024Aug 7, 2024

• Caro-et-al.-Soil-Turnover

  Public
  Supplementary information for Caro et al. (2023, PNAS).

  R

  •0•1•0•0•Updated Jul 25, 2024Jul 25, 2024

• labware_3D_modules

  Public
  OpenSCAD modules for frequently used 3D parts

  OpenSCAD

  •0•3•0•1•Updated May 24, 2024May 24, 2024

• microbialkitchen

  Public
  Tools for microbial media calculations.

  R

  •0•0•8•0•Updated Apr 18, 2024Apr 18, 2024

• 2024_maloney_et_al

  Public
  R

  •0•0•0•0•Updated Apr 16, 2024Apr 16, 2024

• project_template

  Public template
  Project template for data analysis in the Kopf lab

  R

  •0•0•0•0•Updated Apr 8, 2024Apr 8, 2024

• isoCRDS

  Public
  Functions for working with cavity-ringdown spectroscopy (CRDS) data from Picarro instruments.

  JavaScript

  •

  MIT License

  •0•0•0•0•Updated Mar 15, 2024Mar 15, 2024

• invoicer

  Public
  This R package is used internally in the Kopf Lab at CU Boulder and is not yet well documented for external use.

  R

  •0•0•0•0•Updated Feb 26, 2024Feb 26, 2024

• tbltools

  Public
  Tools for Team-Based-Learning classrooms

  R

  •

  GNU General Public License v2.0

  •1•2•1•0•Updated Jul 29, 2023Jul 29, 2023

• orderit

  Public
  This R package is used internally in the Kopf Lab at CU Boulder and is not yet well documented for external use.

  R

  •0•0•6•0•Updated Jul 21, 2023Jul 21, 2023

• lablogger

  Public
  lab logger package and GUI for managing labware devices

  R

  •0•0•17•0•Updated Jun 5, 2023Jun 5, 2023

• 2023_leavitt_et_al

  Public
  R

  •0•0•0•0•Updated May 25, 2023May 25, 2023

• OmanN_Cycling

  Public
  R

  •0•0•0•0•Updated Mar 4, 2023Mar 4, 2023

• lans2r

  Public
  Import and process Look@NanoSIMS data in R

  isotopesgeochemistrynanosims+ 2geobiologyr

  R

  •

  GNU General Public License v3.0

  •1•0•0•1•Updated Feb 20, 2023Feb 20, 2023

• ghctools

  Public
  GitHub Classroom tools

  R

  •0•0•0•0•Updated Feb 9, 2023Feb 9, 2023

• 2021_halamka_et_al

  Public
  Data and code for Halamka et al (2021).

  R

  •0•0•0•0•Updated Jul 11, 2022Jul 11, 2022

• labware_commands

  Public
  Overview of cloud commands for all labware repositories.

  0•0•0•0•Updated Jun 8, 2021Jun 8, 2021

• labware_stepper_pump

  Public
  C++

  •0•0•0•0•Updated Dec 2, 2020Dec 2, 2020

• labware_debug

  Public
  debugging tools for particle devices

  C++

  •0•0•0•0•Updated Dec 1, 2020Dec 1, 2020