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    15 repositories

    • GCTA

      Public
      C++
      •
      GNU General Public License v3.0
      •1•4•0•0•Updated Jul 22, 2025Jul 22, 2025

    • gsMap

      Public
      Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.
      gwasspatial-datastatistical-geneticsspatial-data-analysisbioinformatics-toolspatial-transcriptomics
      Python
      •
      MIT License
      •15•170•0•0•Updated Jul 16, 2025Jul 16, 2025

    • SMR

      Public
      C++
      •
      GNU General Public License v2.0
      •0•3•0•0•Updated Jul 9, 2025Jul 9, 2025

    • SlurmSlim

      Public
      Optimize Slurm Job Scheduling with MCP-Based Memory Estimation
      Python
      •0•2•0•0•Updated Mar 23, 2025Mar 23, 2025

    • adview

      Public
      Adata Viewer: Head/Less/Shape h5ad file in terminal
      Rust
      •
      MIT License
      •0•11•0•0•Updated Mar 19, 2025Mar 19, 2025

    • OSCA

      Public
      C++
      •
      Other
      •0•1•0•0•Updated Mar 17, 2025Mar 17, 2025

    • MeDuSA

      Public
      MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance in bulk RNA-seq data.
      single-cell
      R
      •3•43•0•0•Updated Feb 20, 2025Feb 20, 2025

    • MeDuSAJ

      Public
      C++
      •0•3•0•0•Updated Jan 14, 2025Jan 14, 2025

    • depthmate

      Public
      calculate reference and alternate base depth in tumor-normal pair matched bam
      Rust
      •0•2•0•0•Updated Dec 30, 2024Dec 30, 2024

    • .github

      Public
      JianYang Lab
      0•1•0•0•Updated Dec 21, 2024Dec 21, 2024

    • SMR-Portal

      Public
      SMR-Portal: an online platform for integrative analysis of GWAS and xQTL data to identify complex trait genes.
      Vue
      •
      MIT License
      •3•0•0•0•Updated Dec 12, 2024Dec 12, 2024

    • gsmr2

      Public
      The gsmr R-package implements the GSMR (Generalised Summary-data-based Mendelian Randomisation) method that uses GWAS summary statistics to test for a putative causal association between two phenotypes (e.g., a modifiable risk factor and a disease) based on a multi-SNP model
      R
      •1•17•1•0•Updated Apr 26, 2024Apr 26, 2024

    • gsmr

      Public
      R
      •0•1•0•0•Updated Jan 31, 2024Jan 31, 2024

    • crussmap

      Public
      crussmap is a faster tool to convert genome coordinates between difference reference assemblies.
      rustbioinformatics
      Rust
      •
      MIT License
      •1•20•0•0•Updated May 4, 2023May 4, 2023

    • rsam

      Public
      Random sampler for text-based data in Rust using reservoir sampling algorithm.
      sampledata-science
      Rust
      •
      GNU General Public License v3.0
      •0•9•1•0•Updated Apr 12, 2023Apr 12, 2023