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@IAWG-CSBC-PSON Image Analysis Working Group (CSBC/PS-ON)

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    19 repositories

    • hack2022-10-neuroglancer

      Public
      Challenge 10: 3D Volume Visualization through Neuroglancer
      Python
      •
      MIT License
      •1•1•0•0•Updated Feb 1, 2025Feb 1, 2025

    • Segmentation-challenge

      Public
      Solutions to set of image segmentation challenges
      Jupyter Notebook
      •
      GNU Affero General Public License v3.0
      •0•1•0•0•Updated Oct 29, 2024Oct 29, 2024

    • hack2022-05-cross-talk

      Public
      Challenge 5: Detect and correct spatial cross-talk
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Sep 11, 2024Sep 11, 2024

    • hack2022-11-cosmetic

      Public
      Challenge 11: Automated Artefact Removal in Multiplexed Fluorescence Images for Cosmetic Purposes
      MIT License
      •0•0•1•0•Updated Oct 30, 2023Oct 30, 2023

    • hack2022-09-galaxy

      Public
      Challenge 9: End-to-End Image Processing and Analysis with Galaxy
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 30, 2023Oct 30, 2023

    • hack2022-08-thumbnails

      Public
      Challenge 8: Unsupervised thumbnail generation for whole-slide multiplexed microscopy images
      Python
      •
      MIT License
      •1•2•7•1•Updated Oct 30, 2023Oct 30, 2023

    • hack2022-07-tb-scale

      Public
      Challenge 7: Enabling Image Analysis for TB-scale data
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 30, 2023Oct 30, 2023

    • hack2022-06-viz-comp

      Public
      Challenge 6: Visual Comparison of Single-Cell Clustering Results
      Jupyter Notebook
      •
      MIT License
      •0•0•0•5•Updated Oct 30, 2023Oct 30, 2023

    • hack2022-04-vae

      Public
      Challenge 4: Variational Autoencoder for single cell image feature extraction
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 30, 2023Oct 30, 2023

    • hack2022-01-artifacts

      Public
      Challenge 1: Automated Detection of Microscopy Artifacts
      Python
      •
      MIT License
      •1•1•0•8•Updated Oct 30, 2023Oct 30, 2023

    • hack2022-03-virtual-if

      Public
      Challenge 3: Virtual IF staining for 3D reconstruction and label-free virtual IF staining
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 30, 2023Oct 30, 2023

    • hack2022-02-segmentation

      Public
      Challenge 2: Towards artefact-robust cell segmentation models
      MATLAB
      •
      MIT License
      •0•2•0•0•Updated Oct 30, 2023Oct 30, 2023

    • registration-challenge

      Public
      Code to support the registration Hackathon
      Python
      •3•1•0•0•Updated Jan 3, 2022Jan 3, 2022

    • Segmentation-team2

      Public
      Jupyter Notebook
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Dec 5, 2021Dec 5, 2021

    • pd1-asymmetry

      Public
      PD1 asymmetry challenge
      Jupyter Notebook
      •1•1•0•0•Updated Jul 1, 2021Jul 1, 2021

    • rare-cell

      Public
      Jupyter Notebook
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Mar 24, 2020Mar 24, 2020

    • Segmentation-team3

      Public
      Python
      •
      GNU Affero General Public License v3.0
      •1•0•0•0•Updated Mar 6, 2020Mar 6, 2020

    • morpho-type

      Public archive
      Prediction of cell type from morphology features and neighborhood information
      Jupyter Notebook
      •
      MIT License
      •2•1•0•0•Updated Mar 6, 2020Mar 6, 2020

    • Segmentation-team1

      Public
      Jupyter Notebook
      •
      GNU Affero General Public License v3.0
      •1•1•0•0•Updated Mar 6, 2020Mar 6, 2020