Repositories list

• nf-pySpade

  Public
  The Nextflow pipeline for pySpade.

  Nextflow

  •

  MIT License

  •0•1•0•0•Updated Apr 24, 2025Apr 24, 2025

• TFperturb_CM

  Public
  This is a code repository for TF-perturb-Seq in cardiomyocytes

  Jupyter Notebook

  •0•0•0•0•Updated Mar 12, 2025Mar 12, 2025

• pySpade

  Public
  Single cell Perturbations - Analysis of Differential gene Expression

  pythonsingle-cell-genomicssingle-cell-analysis+ 2single-cell-crispr-screeningperturb-seq

  Python

  •

  MIT License

  •0•8•1•0•Updated Feb 10, 2025Feb 10, 2025

• Perturb-seq-GRN

  Public
  The gene regulatory networks (GRN) generated with Perturb-seq datasets.

  HTML

  •

  MIT License

  •0•0•0•0•Updated Jan 29, 2025Jan 29, 2025

• Perturb-Seq-Processing-Pipeline

  Public
  Python

  •0•0•0•0•Updated Jan 21, 2025Jan 21, 2025

• Breast_cancer_perturbation

  Public
  Enhancer regulatory networks globally connect non-coding breast cancer loci to cancer genes

  single-cell-genomicsperturbation-screensingle-cell-crispr-screening

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Jan 17, 2025Jan 17, 2025

• ESC_engineering

  Public
  Analysis scripts of IGVF ESC engineering project.

  differentiationcrispr-dcas9perturb-seq

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Nov 14, 2024Nov 14, 2024