Repositories list

• RethinkingSelfReplication

  Public
  Repository for the paper "Rethinking Self-Replication: Detecting Distributed Selfhood in the Outlier Cellular Automaton"

  HTML

  •

  MIT License

  •0•0•0•0•Updated Aug 18, 2025Aug 18, 2025

• claude-notebook-bridge

  Public
  claude-notebook-bridge

  TypeScript

  •

  MIT License

  •0•0•0•0•Updated Jul 11, 2025Jul 11, 2025

• MABE

  Public
  Modular Agent Based Evolution Framework

  genetic-algorithmgenetic-programmingevolutionary-algorithms+ 5agent-basedevolutionary-computationdigital-evolutionmarkov-brainswire-brains

  C++

  •

  Other

  •23•83•27•1•Updated Apr 9, 2025Apr 9, 2025

• Robustness-of-Sparsely-Distributed-Representations-to-Adversarial-Attacks-in-Deep-Neural-Networks

  Public
  Repository for the same named article in Entropy

  Jupyter Notebook

  •

  MIT License

  •0•1•0•0•Updated Jun 13, 2023Jun 13, 2023

• Entropy-Detecting-Information-Relays-in-Deep-Neural-Networks

  Public
  Code to generate the data and perform analysis for that publication, contains the code to compute information relay decomposition using a greedy algorithm

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Feb 21, 2023Feb 21, 2023

• NCAA-D-21-01407R2

  Public
  Neuroevolution gives rise to more focused information transfer compared to backpropagation in recurrent neural networks

  Jupyter Notebook

  •0•0•0•0•Updated Oct 27, 2022Oct 27, 2022

• GWASmodel

  Public
  Using data generated by MABE to perform a GWAS and a systematic KO analysis to compare both resutls

  R

  •0•0•0•0•Updated Jan 10, 2022Jan 10, 2022

• nBackPaper

  Public
  Jupyter Notebook

  •0•1•0•0•Updated Sep 21, 2021Sep 21, 2021

• advanced-genome-model

  Public
  Experimental work on creating a next-generation genome model for the autoML and computational biologist community.

  C++

  •0•1•0•0•Updated Jun 13, 2020Jun 13, 2020

• MABE_extras

  Public
  Additional modules, utilities, and python functions for MABE.

  C++

  •0•1•0•0•Updated Feb 23, 2020Feb 23, 2020

• MABE_testing

  Public
  automated executable-level functional and consistency testing

  Python

  •1•1•0•0•Updated Dec 5, 2018Dec 5, 2018

• MABE_Vis

  Public
  Experimental branches dealing with getting non-standard data out of MABE and also visualizing it. Testing ground for new data export features and possibly vis features.

  0•0•0•0•Updated Sep 24, 2018Sep 24, 2018

• TD_EGT

  Public
  code repository for the thermodynamics of evolutionary game theroy

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Jun 20, 2018Jun 20, 2018