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    8 repositories

    • MetaWorks-2.0

      Public
      MetaWorks is a flexible multi-marker metabarcode pipeline for processing paired-end Illumina reads from raw fastq.gz files to taxonomic assignments.
      Python
      •
      GNU General Public License v3.0
      •5•0•0•0•Updated Aug 27, 2025Aug 27, 2025

    • LANDMark

      Public
      Implementation of a decision tree ensemble which splits each node using learned linear and non-linear functions.
      Jupyter Notebook
      •
      MIT License
      •3•0•0•0•Updated Jul 12, 2023Jul 12, 2023

    • webPortal

      Public
      STREAM Watershed Project
      R
      •0•0•0•0•Updated Jun 21, 2022Jun 21, 2022

    • RobinsonEtAl2022_TorontoHarbour

      Public
      R
      •
      Other
      •0•0•0•0•Updated May 27, 2022May 27, 2022

    • SCVUC_COI_metabarcode_pipeline

      Public
      Snakemake bioinformatic pipeline to process COI mtDNA metabarcodes
      bioinformaticscoimetabarcodingco1
      Perl
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Jul 16, 2020Jul 16, 2020

    • HajibabaeiEtAl2019b_benthos_vs_water

      Public
      Datasets and code used to create figures in "Hajibabaei et al., 2019. Watered-down biodiversity? A comparison of metabarcoding results from DNA extracted from matched water and bulk tissue biomonitoring samples. PLoS ONE 14(12): e0225409."
      coimetabarcodingfreshwaterco1benthos
      R
      •
      Other
      •0•0•0•0•Updated Dec 20, 2019Dec 20, 2019

    • HajibabaeiEtAl2019

      Public
      Datasets and code used to create figures in "Hajibabaei et al., 2019. COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems. PLoS ONE 14(9): e0220953."
      primercoimetabarcodingfreshwaterco1
      R
      •
      Other
      •0•1•0•0•Updated Dec 20, 2019Dec 20, 2019

    • CO1testing

      Public
      COI sequences files used to test the COI Classifier Web Portal
      classificationcoimetabarcodingco1mtdna
      0•0•0•0•Updated Jun 27, 2018Jun 27, 2018