Repositories list

• epigenetic-effects-transposons-dmelanogaster

  Public
  Scripts and data for the "Epigenetic effects of TEs".

  Shell

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jul 14, 2025Jul 14, 2025

• MCHelper

  Public
  MCHelper: An automatic tool to curate transposable element libraries

  annotationgenomicscuration+ 1transposable-elements

  Python

  •

  GNU General Public License v3.0

  •3•36•1•0•Updated Jul 3, 2025Jul 3, 2025

• waddington-transposons

  Public
  Scripts used for detecting TEs in the work "Standing genetic variation explains trait evolution by Waddington genetic assimilation"

  Shell

  •0•0•0•0•Updated Feb 24, 2025Feb 24, 2025

• DrosOmics

  Public
  Scripts to create DrosOmics genome browser

  Shell

  •0•0•0•0•Updated Sep 6, 2024Sep 6, 2024

• TEs_Evolve-and-Resequencing

  Public
  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Apr 2, 2024Apr 2, 2024

• chimerics-transcripts-dmelanogaster

  Public
  Scripts and data for the paper "Transposons contribute to the diversification of the head, gut, and ovary transcriptomes across Drosophila natural strains".

  Shell

  •

  GNU General Public License v3.0

  •0•2•0•0•Updated Jan 12, 2024Jan 12, 2024

• Dmelanogaster_Copper

  Public
  Data and scripts of "Natural variation in copper tolerance in Drosophila melanogaster is shaped by transcriptional and physiological changes in the gut" (Green et al. 2022)

  HTML

  •0•0•0•0•Updated Nov 8, 2022Nov 8, 2022

• deNovoTEsDmel

  Public
  R

  •0•0•0•0•Updated Mar 31, 2021Mar 31, 2021

• SNP_caller_benchmarking

  Public
  Shell

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 21, 2020Dec 21, 2020

• environmental_variables

  Public
  R

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Dec 11, 2020Dec 11, 2020

• T-lex3

  Public
  Perl

  •

  GNU General Public License v3.0

  •10•15•5•0•Updated Jun 12, 2020Jun 12, 2020