DrosOmics

Docker image and scripts to run and to create the DrosOmics genome browser: http://gonzalezlab.eu/drosomics

Create environment

conda create -n jbrowse2

conda activate jbrowse

Packages needed

conda install gff3sort gffread tabix genometools samtools seqtk minimap2

Files

1. createBrowser: jbrowse instructions to load all data to DrosOmics
2. data*tsv: tab-delimited files with the name of the data uploaded into DrosOmics
3. JSON-templates: templates for DrosOmics to create the different type tracks
4. ChIP-seq_scripts and RNA-seq_script: scripts to process ChIP/ATAC/RNA-seq

Docker image

The docker image containing DrosOmics is in the drosomics.tar file.

Citation

Coronado-Zamora M, Salces-Ortiz J, González J. 2023. DrosOmics: a browser to explore -omics variation across high-quality reference genomes from natural populations of Drosophila melanogaster. Mol Biol Evol 40: msad075. 10.1093/molbev/msad075