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    39 repositories

    • TwoPUtils

      Public
      Python
      •0•1•0•0•Updated Aug 22, 2025Aug 22, 2025

    • Unity2020_MorphEnvironments

      Public
      C#
      •0•0•0•0•Updated Aug 8, 2025Aug 8, 2025

    • STX3KO_analyses

      Public
      syntaxin 3 CA1 viral knockout experiments
      Jupyter Notebook
      •0•0•0•0•Updated Aug 7, 2025Aug 7, 2025

    • Herber2024

      Public
      Code to replicate analyses in Herber et al. 2024 and 2025
      Jupyter Notebook
      •0•0•0•0•Updated Jul 10, 2025Jul 10, 2025

    • UnityVR_experiments

      Public
      GLSL
      •0•0•0•0•Updated Jun 12, 2025Jun 12, 2025

    • Sosa_et_al_2024

      Public
      Code for analyses and figures in Sosa et al. 2024
      Jupyter Notebook
      •
      MIT License
      •1•1•0•0•Updated Jun 11, 2025Jun 11, 2025

    • AlexA_Library

      Public
      Jupyter Notebook
      •1•1•0•0•Updated Oct 22, 2024Oct 22, 2024

    • two-photon

      Public
      Common scripts, libraries, and utilities for 2p experiments
      Jupyter Notebook
      •7•0•0•0•Updated Aug 9, 2024Aug 9, 2024

    • mec-rapid-learning

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Aug 5, 2024Aug 5, 2024

    • Low_etal_2021

      Public
      Code for analysis and modeling in Low et al. (2021)
      Jupyter Notebook
      •0•0•0•0•Updated Oct 10, 2023Oct 10, 2023

    • ecephys_rig43

      Public
      Modules for processing extracellular electrophysiology data from Neuropixels probes. Forked 20230825.
      Python
      •
      Other
      •101•0•0•0•Updated Jul 25, 2023Jul 25, 2023

    • Masuda_et_al_2023

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated May 9, 2023May 9, 2023

    • ecephys_CSH

      Public
      Charlotte's ecephys pipeline
      Python
      •
      Other
      •1•1•0•0•Updated Mar 20, 2023Mar 20, 2023

    • tutorials

      Public
      Repository of lab generated software tutorials
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Sep 27, 2022Sep 27, 2022

    • SiliconProbeCode

      Public
      Contains a bunch of general purpose functions for processing data from Neuropixel and Cambridge Neurotech probes
      C++
      •1•0•0•0•Updated Jul 21, 2022Jul 21, 2022

    • ln-model-of-mec-neurons

      Public
      Code implements the LN model used to describe spike trains of MEC neurons based on the animal's position, head direction, speed, and theta phase information. Used in Hardcastle et al., 2017.
      MATLAB
      •18•23•0•1•Updated Jun 20, 2022Jun 20, 2022

    • spline-lnp-model

      Public
      version of lnp model using spline inputs
      MATLAB
      •0•0•0•0•Updated Jun 20, 2022Jun 20, 2022

    • mec-reward-remapping

      Public
      Code for Butler, Hardcastle, Giocomo 2019
      MATLAB
      •1•3•0•0•Updated Jun 20, 2022Jun 20, 2022

    • Campbell_Attinger_CellReports

      Public
      Code to generate figures in our Cell Press paper
      MATLAB
      •0•0•0•0•Updated Jul 28, 2021Jul 28, 2021

    • ecephys_spike_sorting_msosa

      Public
      Modules for processing extracellular electrophysiology data from Neuropixels probes
      Python
      •
      Other
      •101•0•0•0•Updated Jun 26, 2021Jun 26, 2021

    • scanbox

      Public
      current neurolabware code
      0•1•0•0•Updated Apr 13, 2021Apr 13, 2021

    • PlittGiocomo_2021

      Public
      Code for analysis and modeling in Plitt & Giocomo (2019)
      Jupyter Notebook
      •3•2•0•0•Updated Mar 22, 2021Mar 22, 2021

    • allenCCF

      Public
      Tools to work with Allen Inst CCF data in matlab
      MATLAB
      •78•0•0•0•Updated Feb 24, 2021Feb 24, 2021

    • suite2p_processing

      Public
      preprocess and run 2P data through Suite2P pipeline
      Python
      •0•0•0•0•Updated Dec 24, 2020Dec 24, 2020

    • Kilosort2

      Public
      Fast spike sorting with drift correction for up to a thousand channels
      MATLAB
      •
      GNU General Public License v2.0
      •271•0•0•0•Updated Oct 2, 2020Oct 2, 2020

    • phy

      Public
      phy: interactive visualization and manual spike sorting of large-scale ephys data
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •173•0•0•0•Updated Jun 25, 2020Jun 25, 2020

    • giocomo-lab-to-nwb

      Public
      NWB conversion scripts and tutorials. A collaboration with Giocomo Lab.
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •3•0•0•0•Updated Feb 27, 2020Feb 27, 2020

    • Unity

      Public
      Asset folders for mouse virtual reality tasks
      C#
      •0•1•0•0•Updated Feb 26, 2020Feb 26, 2020

    • SpikeResponseModel

      Public
      Model used for "Topography in the bursting dynamics of entorhinal neurons" Bant et al.
      Jupyter Notebook
      •0•1•0•0•Updated Feb 1, 2020Feb 1, 2020

    • MightyMorphingPhotonRangers

      Public
      analyses for morphing experiments
      Jupyter Notebook
      •0•0•0•0•Updated Jan 17, 2020Jan 17, 2020