GiocomoLab

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39 repositories

TwoPUtils
Public
Python
•0•1•0•0•Updated Aug 22, 2025Aug 22, 2025
Unity2020_MorphEnvironments
Public
C#
•0•0•0•0•Updated Aug 8, 2025Aug 8, 2025
STX3KO_analyses
Public
syntaxin 3 CA1 viral knockout experiments
Jupyter Notebook
•0•0•0•0•Updated Aug 7, 2025Aug 7, 2025
Herber2024
Public
Code to replicate analyses in Herber et al. 2024 and 2025
Jupyter Notebook
•0•0•0•0•Updated Jul 10, 2025Jul 10, 2025
UnityVR_experiments
Public
GLSL
•0•0•0•0•Updated Jun 12, 2025Jun 12, 2025
Sosa_et_al_2024
Public
Code for analyses and figures in Sosa et al. 2024
Jupyter Notebook
•
MIT License
•1•1•0•0•Updated Jun 11, 2025Jun 11, 2025
AlexA_Library
Public
Jupyter Notebook
•1•1•0•0•Updated Oct 22, 2024Oct 22, 2024
two-photon
Public
Common scripts, libraries, and utilities for 2p experiments
Jupyter Notebook
•7•0•0•0•Updated Aug 9, 2024Aug 9, 2024
mec-rapid-learning
Public
Jupyter Notebook
•0•0•0•0•Updated Aug 5, 2024Aug 5, 2024
Low_etal_2021
Public
Code for analysis and modeling in Low et al. (2021)
Jupyter Notebook
•0•0•0•0•Updated Oct 10, 2023Oct 10, 2023
ecephys_rig43
Public
Modules for processing extracellular electrophysiology data from Neuropixels probes. Forked 20230825.
Python
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Other
•101•0•0•0•Updated Jul 25, 2023Jul 25, 2023
Masuda_et_al_2023
Public
Python
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GNU General Public License v3.0
•0•0•1•0•Updated May 9, 2023May 9, 2023
ecephys_CSH
Public
Charlotte's ecephys pipeline
Python
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Other
•1•1•0•0•Updated Mar 20, 2023Mar 20, 2023
tutorials
Public
Repository of lab generated software tutorials
Jupyter Notebook
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MIT License
•0•0•0•0•Updated Sep 27, 2022Sep 27, 2022
SiliconProbeCode
Public
Contains a bunch of general purpose functions for processing data from Neuropixel and Cambridge Neurotech probes
C++
•1•0•0•0•Updated Jul 21, 2022Jul 21, 2022
ln-model-of-mec-neurons
Public
Code implements the LN model used to describe spike trains of MEC neurons based on the animal's position, head direction, speed, and theta phase information. Used in Hardcastle et al., 2017.
MATLAB
•18•23•0•1•Updated Jun 20, 2022Jun 20, 2022
spline-lnp-model
Public
version of lnp model using spline inputs
MATLAB
•0•0•0•0•Updated Jun 20, 2022Jun 20, 2022
mec-reward-remapping
Public
Code for Butler, Hardcastle, Giocomo 2019
MATLAB
•1•3•0•0•Updated Jun 20, 2022Jun 20, 2022
Campbell_Attinger_CellReports
Public
Code to generate figures in our Cell Press paper
MATLAB
•0•0•0•0•Updated Jul 28, 2021Jul 28, 2021
ecephys_spike_sorting_msosa
Public
Modules for processing extracellular electrophysiology data from Neuropixels probes
Python
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Other
•101•0•0•0•Updated Jun 26, 2021Jun 26, 2021
scanbox
Public
current neurolabware code
0•1•0•0•Updated Apr 13, 2021Apr 13, 2021
PlittGiocomo_2021
Public
Code for analysis and modeling in Plitt & Giocomo (2019)
Jupyter Notebook
•3•2•0•0•Updated Mar 22, 2021Mar 22, 2021
allenCCF
Public
Tools to work with Allen Inst CCF data in matlab
MATLAB
•78•0•0•0•Updated Feb 24, 2021Feb 24, 2021
suite2p_processing
Public
preprocess and run 2P data through Suite2P pipeline
Python
•0•0•0•0•Updated Dec 24, 2020Dec 24, 2020
Kilosort2
Public
Fast spike sorting with drift correction for up to a thousand channels
MATLAB
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GNU General Public License v2.0
•271•0•0•0•Updated Oct 2, 2020Oct 2, 2020
phy
Public
phy: interactive visualization and manual spike sorting of large-scale ephys data
Python
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BSD 3-Clause "New" or "Revised" License
•173•0•0•0•Updated Jun 25, 2020Jun 25, 2020
giocomo-lab-to-nwb
Public
NWB conversion scripts and tutorials. A collaboration with Giocomo Lab.
Jupyter Notebook
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BSD 3-Clause "New" or "Revised" License
•3•0•0•0•Updated Feb 27, 2020Feb 27, 2020
Unity
Public
Asset folders for mouse virtual reality tasks
C#
•0•1•0•0•Updated Feb 26, 2020Feb 26, 2020
SpikeResponseModel
Public
Model used for "Topography in the bursting dynamics of entorhinal neurons" Bant et al.
Jupyter Notebook
•0•1•0•0•Updated Feb 1, 2020Feb 1, 2020
MightyMorphingPhotonRangers
Public
analyses for morphing experiments
Jupyter Notebook
•0•0•0•0•Updated Jan 17, 2020Jan 17, 2020