Repositories list

• Apollo3

  Public
  JBrowse 2 plugin for editing annotations on an Apollo server

  TypeScript

  •

  Apache License 2.0

  •6•12•72•6•Updated Aug 22, 2025Aug 22, 2025

• jbrowse-components

  Public
  Source code for JBrowse 2, a modern React-based genome browser

  visualizationbioinformaticsgenomics+ 1jbrowse

  TypeScript

  •

  Apache License 2.0

  •70•251•276•30•Updated Aug 22, 2025Aug 22, 2025

• cram-js

  Public
  Read CRAM v3 and v2 in node or in the browser

  genomics

  TypeScript

  •

  MIT License

  •9•18•8•1•Updated Aug 20, 2025Aug 20, 2025

• bam-js

  Public
  Parse BAM and BAM index files in javascript for node and the browser

  TypeScript

  •

  MIT License

  •9•24•9•2•Updated Aug 18, 2025Aug 18, 2025

• genomefeatures

  Public
  A D3 renderer for gene and variant features

  TypeScript

  •1•0•4•0•Updated Aug 12, 2025Aug 12, 2025

• jbrowse-plugin-template

  Public template
  Template to quickly start a new JBrowse 2 plugin

  TypeScript

  •

  Apache License 2.0

  •1•7•16•3•Updated Aug 10, 2025Aug 10, 2025

• react-msaview

  Public
  A multiple sequence alignment viewer

  TypeScript

  •

  MIT License

  •3•23•27•0•Updated Jul 31, 2025Jul 31, 2025

• jbrowse-plugin-protein3d

  Public
  3D protein structure visualizer in jbrowse 2 - WIP

  TypeScript

  •0•0•3•1•Updated Jul 29, 2025Jul 29, 2025

• jbrowse-react-linear-genome-view-vite-demo

  Public
  TypeScript

  •1•0•0•0•Updated Jul 21, 2025Jul 21, 2025

• jbrowse-react-linear-genome-view-rsbuild-demo

  Public
  TypeScript

  •0•0•0•0•Updated Jul 21, 2025Jul 21, 2025

• jbrowse-react-linear-genome-view-nextjs-demo

  Public
  TypeScript

  •1•1•1•0•Updated Jul 21, 2025Jul 21, 2025

• jbrowse-react-linear-genome-view-farm-demo

  Public
  TypeScript

  •0•0•0•0•Updated Jul 21, 2025Jul 21, 2025

• jbrowse-react-linear-genome-view-cra5-demo

  Public
  TypeScript

  •0•0•0•1•Updated Jul 21, 2025Jul 21, 2025

• jbrowse-react-circular-genome-view-nextjs-demo

  Public
  TypeScript

  •0•0•0•0•Updated Jul 21, 2025Jul 21, 2025

• jbrowse-react-circular-genome-view-cra5-demo

  Public
  TypeScript

  •0•0•0•0•Updated Jul 21, 2025Jul 21, 2025

• jbrowse-react-app-rsbuild-demo

  Public
  TypeScript

  •0•0•0•0•Updated Jul 21, 2025Jul 21, 2025

• jbrowse-react-app-vite-demo

  Public
  TypeScript

  •0•0•1•0•Updated Jul 21, 2025Jul 21, 2025

• jbrowse-react-app-nextjs-demo

  Public
  TypeScript

  •0•1•1•0•Updated Jul 21, 2025Jul 21, 2025

• jbrowse-react-app-farm-demo

  Public
  TypeScript

  •0•0•0•0•Updated Jul 21, 2025Jul 21, 2025

• jbrowse-react-app-cra5-demo

  Public
  TypeScript

  •0•0•0•0•Updated Jul 21, 2025Jul 21, 2025

• jbrowse

  Public
  JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.

  bioinformaticsgenomicsbiology+ 3genome-annotationgenome-browserprotein-annotation

  JavaScript

  •

  Other

  •198•472•147•11•Updated Jul 15, 2025Jul 15, 2025

• Apollo

  Public
  Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.

  grailsgwtgroovy+ 4apollojbrowsegenome-annotation-editorjbrowse-plugin

  Groovy

  •

  Other

  •85•137•239•1•Updated Jun 17, 2025Jun 17, 2025

• proteinbrowser

  Public
  0•0•0•0•Updated Jun 15, 2025Jun 15, 2025

• gff-js

  Public
  parse and format streams of GFF3, for node or webpack

  genomics

  TypeScript

  •

  MIT License

  •6•10•1•2•Updated Jun 13, 2025Jun 13, 2025

• generic-filehandle2

  Public
  modernization of the original generic-filehandle, no Buffer polyfill needed

  TypeScript

  •0•0•0•1•Updated Jun 10, 2025Jun 10, 2025

• tabix-js

  Public
  Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser

  TypeScript

  •

  MIT License

  •5•14•2•0•Updated Jun 10, 2025Jun 10, 2025

• bbi-js

  Public
  Parser for bigwig and bigbed files

  TypeScript

  •

  MIT License

  •6•8•8•1•Updated Jun 10, 2025Jun 10, 2025

• jbrowse-plugin-msaview

  Public
  multiple sequence alignment browser plugin for JBrowse 2

  TypeScript

  •

  Apache License 2.0

  •0•5•5•0•Updated Jun 6, 2025Jun 6, 2025

• vcf-js

  Public
  High performance Variant Call Format (VCF) parser in pure JavaScript

  TypeScript

  •

  MIT License

  •5•24•2•1•Updated Jun 6, 2025Jun 6, 2025

• ucsc-hub-js

  Public
  read and write UCSC track and assembly hub files in node or the browser

  TypeScript

  •

  MIT License

  •2•5•5•1•Updated Jun 2, 2025Jun 2, 2025