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    77 repositories

    • fganalysis-r

      Public
      Library of R tools for common analyses
      R
      •
      Other
      •1•0•6•1•Updated Aug 29, 2025Aug 29, 2025

    • regenie-pipelines

      Public
      WDL pipelines for running regenie
      WDL
      •
      MIT License
      •5•9•9•4•Updated Aug 29, 2025Aug 29, 2025

    • CO2AnalysisModules

      Public
      R
      •
      Other
      •0•0•6•0•Updated Aug 29, 2025Aug 29, 2025

    • CohortOperations2

      Public
      R
      •
      Other
      •0•2•38•0•Updated Aug 29, 2025Aug 29, 2025

    • ROMOPAPI

      Public
      ROMOPAPI
      R
      •
      MIT License
      •0•0•2•0•Updated Aug 28, 2025Aug 28, 2025

    • LOFanalysis

      Public
      Pipeline to return Gene/Sample LOF matrix
      WDL
      •
      MIT License
      •0•0•0•0•Updated Aug 28, 2025Aug 28, 2025

    • ETL

      Public
      second version for the ETL of the detailed longitudinal data to the OMOP-CDM
      R
      •
      MIT License
      •1•0•3•0•Updated Aug 27, 2025Aug 27, 2025

    • FinnGenUtilsR

      Public
      FinnGenUtilsR
      R
      •
      Other
      •0•3•3•1•Updated Aug 25, 2025Aug 25, 2025

    • pheweb

      Public
      A tool to build multi-phenotype GWAS browsers
      Python
      •
      MIT License
      •75•8•46•3•Updated Aug 22, 2025Aug 22, 2025

    • risteys

      Public
      Elixir
      •
      MIT License
      •0•5•73•0•Updated Aug 21, 2025Aug 21, 2025

    • HadesExtras

      Public
      HadesExtras
      R
      •
      Other
      •0•0•2•1•Updated Aug 20, 2025Aug 20, 2025

    • fg-endpoint-tools

      Public
      Collection of tools to help working on the FinnGen endpoints.
      Python
      •
      MIT License
      •0•0•1•0•Updated Aug 18, 2025Aug 18, 2025

    • commons

      Public
      Workflows for FINNGEN data munging
      Python
      •
      MIT License
      •0•3•3•4•Updated Aug 7, 2025Aug 7, 2025

    • EunomiaDatasets

      Public
      Hosting of sample CDM datasets in CSV format for use in testing throughout the OHDSI community. Eunomia R package to manage the datasets can be accessed at https://github.com/OHDSI/Eunomia.
      Apache License 2.0
      •4•0•0•0•Updated Aug 7, 2025Aug 7, 2025

    • qc_imputation

      Public
      Genotype QC and imputation pipeline
      WDL
      •
      MIT License
      •0•2•12•2•Updated Aug 6, 2025Aug 6, 2025

    • CromwellInteract

      Public
      Python
      •
      MIT License
      •0•0•3•0•Updated Jul 21, 2025Jul 21, 2025

    • endpcorr

      Public
      Computing FinnGen endpoint correlations
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 3, 2025Jul 3, 2025

    • kanta_lab_harmonisation_public

      Public
      R
      •
      MIT License
      •0•1•3•0•Updated Jul 1, 2025Jul 1, 2025

    • LDSC

      Public
      Python
      •
      MIT License
      •2•3•1•0•Updated Jun 30, 2025Jun 30, 2025

    • EHRBrowser

      Public
      0•0•0•0•Updated Jun 30, 2025Jun 30, 2025

    • kanta_lab_preprocessing

      Public
      Repo for kanta lab QC
      Python
      •
      MIT License
      •0•1•2•0•Updated Jun 27, 2025Jun 27, 2025

    • autoreporting

      Public
      Python
      •
      MIT License
      •2•4•21•0•Updated Jun 19, 2025Jun 19, 2025

    • finemapping-pipeline

      Public
      Statistical fine-mapping pipeline in FinnGen
      WDL
      •
      MIT License
      •10•30•9•2•Updated Jun 19, 2025Jun 19, 2025

    • mmpio

      Public
      Convert summary stats to input for MMP
      Go
      •
      MIT License
      •2•0•0•2•Updated Jun 4, 2025Jun 4, 2025

    • CS-PRS-pipeline

      Public
      PRS pipeline using PRS_CS
      Python
      •
      MIT License
      •0•14•2•0•Updated May 30, 2025May 30, 2025

    • META_ANALYSIS

      Public
      Tools for doing x way meta-analysis
      Python
      •
      MIT License
      •14•11•3•3•Updated Apr 16, 2025Apr 16, 2025

    • coloc.susie.direct

      Public
      Colocalization on Susie results from FinnGen fine-mapping pipeline
      R
      •0•1•1•0•Updated Apr 15, 2025Apr 15, 2025

    • LongitudinalDummyDataGenerator

      Public
      R
      •
      MIT License
      •0•0•3•2•Updated Mar 17, 2025Mar 17, 2025

    • pca_kinship

      Public
      PCA & Kinship pipeline
      Python
      •
      MIT License
      •0•2•0•0•Updated Mar 16, 2025Mar 16, 2025

    • pan-ukbb-mapping

      Public
      Mapping between FinnGen phenotypes and Pan-UKBB phenotypes
      MIT License
      •0•3•1•0•Updated Jan 17, 2025Jan 17, 2025