EMSL Computing

All

24 repositories

ftmsRanalysis
Public
R
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Other
•10•30•3•3•Updated May 23, 2025May 23, 2025
CoreMS
Public
CoreMS is a comprehensive mass spectrometry software framework
data-analysis metabolomics mass-spectrometry dissolved-organic-matter metabolomics-pipeline molecular-search molecular-formulae-assignment molecular-database complex-mixture natural-organic-matter
Python
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BSD 2-Clause "Simplified" License
•36•59•0•2•Updated May 22, 2025May 22, 2025
MetaMS
Public
Python
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BSD 2-Clause "Simplified" License
•1•3•0•0•Updated May 20, 2025May 20, 2025
Pore2Chip
Public
A python package that takes XCT images of porous materials and generates representative digital twin micromodels
python flow machine-learning lab data-visualization scientific-visualization neural-networks data-analysis soil porous-media
Python
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MIT License
•3•5•6•0•Updated May 19, 2025May 19, 2025
PIML4PDE
Public
Physics-Informed Machine Learning for Solving Partial Differential Equations
Other
•3•10•0•0•Updated Feb 12, 2025Feb 12, 2025
EnviroMS
Public
EnviroMS is a software for natural organic matter data processing and annotation
Python
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BSD 2-Clause "Simplified" License
•3•4•0•0•Updated Jan 29, 2025Jan 29, 2025
Chip2Flow
Public
A python package that takes multimodal experimental data to calibrate, simulate, and understand soil carbon cycling
0•1•0•0•Updated Jan 14, 2025Jan 14, 2025
FREDA
Public
HTML
•1•3•2•1•Updated Dec 20, 2024Dec 20, 2024
TMSig
Public
An R package containing tools to prepare, analyze, and visualize named lists of sets, with an emphasis on molecular signatures (such as gene sets).
gene-sets r r-package molecular-signatures
R
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GNU General Public License v3.0
•0•4•2•0•Updated Oct 21, 2024Oct 21, 2024
mapDataAccess-lib
Public
R
•0•0•0•0•Updated Aug 6, 2024Aug 6, 2024
CCSz-demo
Public
Python and R scripts with examples demonstrating the conversion of IM-MS raw data to CCS/z space.
mass-spectrometry ccs ion-mobility-spectrometry mza pnnl-preprocessor
Python
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BSD 2-Clause "Simplified" License
•0•1•0•0•Updated Mar 27, 2024Mar 27, 2024
isoforma-lib
Public
R package for the relative quantitation of proteoforms with MS2 fragmentation patterns
R
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BSD 2-Clause "Simplified" License
•0•3•1•0•Updated Feb 5, 2024Feb 5, 2024
nmRanalysis
Public
R
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Other
•2•4•0•1•Updated Jan 24, 2024Jan 24, 2024
pspecterlib
Public
Proteomics R package for matching peptide fragments for both digested and intact proteomics
R
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BSD 2-Clause "Simplified" License
•1•8•1•0•Updated Jan 2, 2024Jan 2, 2024
IsoForma-paper
Public
HTML
•0•0•1•0•Updated Oct 19, 2023Oct 19, 2023
PSpecteR
Public
The PSpecteR users manual can be accessed via the weblink below
HTML
•1•3•0•0•Updated May 25, 2023May 25, 2023
CoreMS-AutoUpload
Public
Instrument deployed Auto Uploader integrated with CoreMS-Portal.
Python
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BSD 2-Clause "Simplified" License
•0•1•0•0•Updated May 1, 2023May 1, 2023
PeakDecoder
Public
A workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. DOI: 10.5281/zenodo.
metabolomics mass-spectrometry false-discovery-rate ion-mobility-spectrometry data-independent-acquisition machine-learning
R
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BSD 2-Clause "Simplified" License
•4•15•0•0•Updated Apr 25, 2023Apr 25, 2023
grip-tomo
Public
docs: https://grip-tomo.readthedocs.io/en/latest/
python
Python
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BSD 2-Clause "Simplified" License
•3•3•0•0•Updated Mar 24, 2023Mar 24, 2023
Day3-EMSL-SummerSchool-2022
Public
Jupyter Notebook
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BSD 2-Clause "Simplified" License
•1•4•0•0•Updated Jul 18, 2022Jul 18, 2022
CoreMS-Portal
Public
JavaScript
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BSD 2-Clause "Simplified" License
•0•7•0•0•Updated Jul 13, 2022Jul 13, 2022
RBD-intact-peak-analysis
Public
R
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BSD 2-Clause "Simplified" License
•0•0•0•0•Updated Jul 1, 2022Jul 1, 2022
MetaCycData
Public
R
•1•2•0•0•Updated Oct 11, 2021Oct 11, 2021
dimpl
Public
R
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Other
•0•1•0•0•Updated Jul 13, 2020Jul 13, 2020