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@DIAGNijmegen Diagnostic Image Analysis Group

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    225 repositories

    • rse-gcapi

      Public
      Python client for the grand-challenge.org API
      Python
      •
      Apache License 2.0
      •3•2•12•5•Updated Oct 31, 2025Oct 31, 2025

    • website-content

      Public
      This repository stores all the content for the diag websites.
      TeX
      •
      MIT License
      •76•6•19•6•Updated Oct 31, 2025Oct 31, 2025

    • Totalregistrator

      Public
      This git contains code for TotalRegistrator, a multi-organ image registration model.
      Python
      •
      Other
      •0•0•0•0•Updated Oct 30, 2025Oct 30, 2025

    • rse-grand-challenge-dicom-de-id-procedure

      Public
      DICOM de-identification Procedure for Grand-Challenge.org
      Python
      •
      Apache License 2.0
      •0•1•0•1•Updated Oct 28, 2025Oct 28, 2025

    • rse-grand-challenge-forge

      Public
      Generation of challenge packs
      Python
      •
      Apache License 2.0
      •0•0•3•0•Updated Oct 28, 2025Oct 28, 2025

    • rse-pyswot

      Public
      Python implementation of JetBrains/swot
      Python
      •
      Apache License 2.0
      •1•1•0•0•Updated Oct 28, 2025Oct 28, 2025

    • rse-cirrus-benchmark-suite

      Public
      A small playwright-based CIRRUS benchmark suite, meant to detect speedups or slowdowns.
      grand-challenge
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 27, 2025Oct 27, 2025

    • rse-sagemaker-shim

      Public
      Adapts algorithms that implement the Grand Challenge inference API for running in SageMaker
      sagemakergrand-challenge
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Oct 24, 2025Oct 24, 2025

    • pathology-whole-slide-data

      Public
      A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
      pythondeep-learningiteratorwsdpathologywhole-slide-imagingwsicomputational-pathologywsmwsa
      Python
      •
      Apache License 2.0
      •30•107•6•1•Updated Oct 23, 2025Oct 23, 2025

    • unicorn_eval

      Public
      Python
      •
      Apache License 2.0
      •5•6•1•0•Updated Oct 22, 2025Oct 22, 2025

    • llm_extractinator

      Public
      This project enables the efficient extraction of structured data from unstructured text using large language models (LLMs). It provides a flexible configuration system and supports a variety of tasks.
      Python
      •
      Apache License 2.0
      •0•6•1•0•Updated Oct 22, 2025Oct 22, 2025

    • Literature

      Public
      The literature generated and cited by the group
      TeX
      •3•1•0•0•Updated Oct 21, 2025Oct 21, 2025

    • rse-grand-challenge-dicom-de-identifier

      Public
      A Python package that de-identifies a (set of) DICOM files using a preset procedure
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 21, 2025Oct 21, 2025

    • nnUNet-for-pathology

      Public
      Adapted nnUNet framework with additional features to suit the requirements for pathology applications
      Python
      •
      Apache License 2.0
      •2.2k•22•0•0•Updated Oct 21, 2025Oct 21, 2025

    • beetle

      Public
      A multicentric dataset for training and benchmarking breast cancer segmentation in H&E slides
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Oct 3, 2025Oct 3, 2025

    • TrackRAD25_submission

      Public
      Python
      •
      Apache License 2.0
      •0•2•0•0•Updated Sep 12, 2025Sep 12, 2025

    • dragon_prep

      Public
      Preprocessing scripts for the DRAGON benchmark
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 12, 2025Sep 12, 2025

    • ignite-data-toolkit

      Public
      A tissue and cell-level annotated H&E and PD-L1 histopathology image dataset in non-small cell lung cancer
      Python
      •
      Apache License 2.0
      •1•1•1•0•Updated Sep 4, 2025Sep 4, 2025

    • bodyct-lung-malignancy-fairness

      Public
      Repository containing code of Shaurya Gaur's master thesis project
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 2, 2025Sep 2, 2025

    • oncology-longinet-container

      Public
      The code submitted to grand challenge AutoPET track 2.
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 1, 2025Sep 1, 2025

    • unicorn_baseline_template

      Public
      Python
      •
      Apache License 2.0
      •1•6•1•0•Updated Aug 22, 2025Aug 22, 2025

    • fm-benchmarking

      Public
      Code to run FMs on different medical imaging benchmarks
      Apache License 2.0
      •0•0•0•0•Updated Aug 21, 2025Aug 21, 2025

    • CHIMERA

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Aug 12, 2025Aug 12, 2025

    • demo-algorithm-template

      Public
      A demo algorithm template
      Shell
      •1•0•0•0•Updated Aug 8, 2025Aug 8, 2025

    • rse-panimg

      Public
      Conversion of medical images to MHA and TIFF.
      Python
      •
      Apache License 2.0
      •7•14•8•1•Updated Aug 8, 2025Aug 8, 2025

    • dragon_submission_llm_extractinator_phi4_translation

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 7, 2025Aug 7, 2025

    • dragon_submission_llm_extractinator_llama3.1_translation

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 7, 2025Aug 7, 2025

    • dragon_submission_llm_extractinator_mistral-nemo_translation

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 7, 2025Aug 7, 2025

    • dragon_submission_llm_extractinator_llama3.3

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 7, 2025Aug 7, 2025

    • dragon_submission_llm_extractinator_deepseek-r1

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 7, 2025Aug 7, 2025