Repositories list

• ClustAssess

  Public
  Tools for assessing clustering robustness

  machine-learningbioinformaticsgenomics+ 5clusteringunsupervised-learningsingle-cellrobustnessparameter-optimization

  R

  •

  Other

  •4•25•1•0•Updated Jul 30, 2025Jul 30, 2025

• magpie

  Public
  Python

  •1•3•0•0•Updated Jul 9, 2025Jul 9, 2025

• Roos_Organoid_2026

  Public
  Data analysis scripts for the Organoid project.

  R

  •0•0•0•0•Updated Jul 2, 2025Jul 2, 2025

• crowflow-py

  Public
  Python

  •

  MIT License

  •0•2•0•0•Updated Jun 25, 2025Jun 25, 2025

• DARG_PMS

  Public
  R

  •0•0•0•0•Updated Jun 3, 2025Jun 3, 2025

• cRowflow

  Public
  HTML

  •0•0•0•0•Updated Mar 4, 2025Mar 4, 2025

• Grey-Wilson_2024

  Public
  R

  •

  MIT License

  •0•0•0•0•Updated Feb 25, 2025Feb 25, 2025

• krzak_et_al_2025

  Public
  R

  •

  MIT License

  •0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

• ClustAssessPy

  Public
  machine-learningbioinformaticsgenomics+ 5clusteringunsupervised-learningsingle-cellrobustnessparameter-optimisation

  C++

  •

  MIT License

  •0•3•0•0•Updated Nov 1, 2024Nov 1, 2024

• balasz_thora

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Sep 19, 2024Sep 19, 2024

• IonescuNicaise2023

  Public
  R

  •0•0•0•0•Updated Sep 15, 2024Sep 15, 2024

• MASLD-NASH

  Public
  scripts associated with NAFLD-NASH project

  R

  •2•23•1•0•Updated May 23, 2024May 23, 2024

• Pinte-et-al-2023

  Public
  R

  •0•0•0•0•Updated Jan 26, 2024Jan 26, 2024

• complex1_microglia

  Public
  R

  •0•0•1•0•Updated Jan 18, 2024Jan 18, 2024

• bulkAnalyseR

  Public
  HTML

  •

  GNU General Public License v3.0

  •3•28•1•0•Updated Nov 15, 2023Nov 15, 2023

• SARS_CoV-2_MAAP_plots

  Public
  R

  •0•0•0•0•Updated Oct 19, 2023Oct 19, 2023

• Nakanoh-et-al-2023

  Public
  R

  •1•1•0•0•Updated Sep 5, 2023Sep 5, 2023

• coRRectoR

  Public
  Functional batch correction method

  R

  •

  MIT License

  •0•0•0•0•Updated Mar 1, 2023Mar 1, 2023

• teaching

  Public
  HTML

  •1•5•0•0•Updated Nov 14, 2022Nov 14, 2022

• split-manuscript

  Public
  R

  •0•0•0•0•Updated Nov 4, 2022Nov 4, 2022

• Morell-et-al-2022-scRNAseq

  Public
  R

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 1, 2022Mar 1, 2022

• Lawrence-et-al-2021-index-sort-feature-selection

  Public
  Index sort data and feature selection code for Lawrence et al. 2021

  HTML

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 5, 2021Nov 5, 2021

• Lawrence-et-al-2021-scRNAseq

  Public
  Code for single-cell RNA-seq processing and analysis for Lawrence et al. 2021

  R

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 5, 2021Nov 5, 2021

• feamiR

  Public
  R

  •0•2•0•0•Updated Oct 14, 2021Oct 14, 2021

• noisyR

  Public
  Package documentation and examples:

  R

  •0•9•0•0•Updated Oct 1, 2021Oct 1, 2021

• questionable-analysis

  Public
  An example of questionable data analysis

  HTML

  •

  MIT License

  •1•0•0•0•Updated Mar 16, 2021Mar 16, 2021

• cell-types-train-control-workflow

  Public
  Control workflow for generating pre-trained classifiers on SCXA datasets

  Nextflow

  •1•0•0•0•Updated Nov 30, 2020Nov 30, 2020

• cell-types-prod-control-workflow

  Public
  cell-types-prod-control-workflow

  Nextflow

  •1•0•0•0•Updated May 18, 2020May 18, 2020