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    38 repositories

    • CogStack-NiFi

      Public
      Building data processing pipelines for documents processing with NLP using Apache NiFi and related services
      nlpelasticsearchkibanarestdata-integrationnifiapache-nifidata-pipelineselectronic-health-records
      Python
      •
      Other
      •19•54•0•0•Updated Nov 4, 2025Nov 4, 2025

    • cogstack-nlp

      Public
      CogStack NLP, including the Medical Concept Annotation Tool MedCAT
      HTML
      •
      Apache License 2.0
      •2•18•3•7•Updated Nov 3, 2025Nov 3, 2025

    • CogStack-ModelServe

      Public
      A model serving and governance system for CogStack NLP solutions
      Python
      •
      Apache License 2.0
      •2•1•1•4•Updated Nov 3, 2025Nov 3, 2025

    • cogstack-jupyter-hub

      Public
      Custom Jupyter Hub Docker image with example notebooks
      Jupyter Notebook
      •
      Other
      •2•3•0•1•Updated Oct 31, 2025Oct 31, 2025

    • cogstack-platform-toolkit

      Public
      CogStack Platform-wide code, documentation and tooling.
      documentationclouddeployment
      HCL
      •
      Other
      •0•0•0•0•Updated Oct 29, 2025Oct 29, 2025

    • cogstack-model-gateway

      Public
      A Gateway for accessing Cogstack ModelServe instances
      Python
      •
      Apache License 2.0
      •0•2•0•0•Updated Oct 10, 2025Oct 10, 2025

    • working_with_cogstack

      Public
      Basic setup and easy to follow templates to interact and search CogStack for data analysts
      Python
      •
      Apache License 2.0
      •8•12•0•1•Updated Sep 18, 2025Sep 18, 2025

    • .github

      Public
      0•0•0•0•Updated Sep 5, 2025Sep 5, 2025

    • MedCATtrainer

      Public archive
      A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.
      nlpmachine-learningsnomedumlsactive-learningmedcat
      Python
      •
      Apache License 2.0
      •35•85•18•5•Updated Sep 4, 2025Sep 4, 2025

    • ocr-service

      Public
      Python
      •
      Other
      •2•4•0•0•Updated Aug 28, 2025Aug 28, 2025

    • MedCATv2tutorials

      Public archive
      Tutorials for MedCATv2
      Jupyter Notebook
      •0•2•0•0•Updated Jul 31, 2025Jul 31, 2025

    • MedCAT

      Public archive
      Medical Concept Annotation Tool
      nlpnatural-language-processinginformation-extractionhealthcarelearnsnomednercollaborateumlselectronic-health-records
      Python
      •
      Apache License 2.0
      •111•512•0•1•Updated Jul 25, 2025Jul 25, 2025

    • MedCAT2

      Public archive
      MedCATv2
      nlpepr
      Python
      •
      Other
      •1•2•0•1•Updated Jun 25, 2025Jun 25, 2025

    • MedCATservice

      Public archive
      Running MedCAT as a RESTful web service
      pythonnlpdockerflaskmicroservicesrestspacysnomedumls
      Python
      •
      Other
      •15•21•0•0•Updated Jun 23, 2025Jun 23, 2025

    • MedCATdemowebapp

      Public archive
      Demo web app for MedCAT
      Python
      •0•0•0•1•Updated Jun 20, 2025Jun 20, 2025

    • Foresight

      Public
      Deep Generative Modelling of Patient Timelines using Electronic Health Records
      Jupyter Notebook
      •
      Apache License 2.0
      •11•65•2•0•Updated Jun 17, 2025Jun 17, 2025

    • CogStackCohort

      Public
      A MedCAT annotations retrieval tool for cohort identification
      HTML
      •
      Other
      •2•2•0•0•Updated Jun 5, 2025Jun 5, 2025

    • MedCATtutorials

      Public
      General tutorials for the setup and use of MedCAT.
      natural-language-processingelectronic-health-recordsclinical-data
      HTML
      •
      MIT License
      •16•40•1•1•Updated May 22, 2025May 22, 2025

    • cogstack-rag-search

      Public
      Python
      •0•0•1•0•Updated May 8, 2025May 8, 2025

    • text-2-sql

      Public
      Python
      •0•0•0•0•Updated Apr 7, 2025Apr 7, 2025

    • AnonCATDemo

      Public archive
      The Deidentify app uses MedCAT to automatically redact or replace sensitive information in documents. Customisable rules and batch processing make it easy to handle large datasets.
      Vue
      •
      Apache License 2.0
      •2•2•0•0•Updated Apr 12, 2024Apr 12, 2024

    • OpenGPT

      Public
      A framework for creating grounded instruction based datasets and training conversational domain expert Large Language Models (LLMs).
      nlpmedicinehealthhealthcarehuggingfaceopengptgpt-4llmchatgpt
      Jupyter Notebook
      •
      Apache License 2.0
      •45•360•3•2•Updated May 30, 2023May 30, 2023

    • iCAT

      Public
      A docker container for CogStack/MedCAT/HuggingFace development in isolated environments.
      Vim Script
      •1•3•0•2•Updated May 22, 2023May 22, 2023

    • tika-service

      Public
      Apache Tika running as a web service
      Java
      •
      Apache License 2.0
      •5•18•1•0•Updated Jan 14, 2023Jan 14, 2023

    • nlp2phenome

      Public archive
      using AI model to infer patient phenotypes from identified named entities (instances of biomedical concepts)
      nlpmachine-learningehr-phenotyping
      Python
      •2•10•2•4•Updated Jan 13, 2023Jan 13, 2023

    • CogStack-SemEHR

      Public archive
      Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research
      semantic-webelectronic-health-recordumlssemantic-querysemantic-annotation
      JavaScript
      •
      Apache License 2.0
      •20•89•3•0•Updated Jan 13, 2023Jan 13, 2023

    • risk-score-builder

      Public archive
      Map clinical risk score concepts to structured definitions using ontologies, calculate structured risk scores from NLP.
      Python
      •
      GNU General Public License v3.0
      •2•5•1•0•Updated Jan 13, 2023Jan 13, 2023

    • OAC-NLP

      Public archive
      Python
      •
      GNU General Public License v3.0
      •1•2•2•0•Updated Jan 13, 2023Jan 13, 2023

    • CogStack-PatientTimeline

      Public archive
      A patient timeline browser build on-top of CogStack
      SCSS
      •0•3•0•0•Updated Jan 13, 2023Jan 13, 2023

    • texscrubber

      Public archive
      Personal information de-identification tool
      Java
      •
      Apache License 2.0
      •2•2•0•0•Updated Jan 13, 2023Jan 13, 2023