Repositories list

• preprocessing

  Public
  preprocessing tools for multi-modal 3D brain MRI

  mrimulti-modalbrain+ 4normalizationbrain-extractionco-registrationskullstripping

  C

  •

  Apache License 2.0

  •6•20•8•0•Updated Aug 20, 2025Aug 20, 2025

• panoptica

  Public
  panoptica -- instance-wise evaluation of 3D semantic and instance segmentation maps

  semanticmetricsevaluation+ 5segmentationinstance3dpanopticinstance-wise

  Python

  •

  Apache License 2.0

  •7•26•25•2•Updated Aug 16, 2025Aug 16, 2025

• stroke_segmentor

  Public
  Python

  •0•0•1•0•Updated Aug 9, 2025Aug 9, 2025

• BraTS

  Public
  Providing top performing algorithms from the Brain Tumor Segmentation (BraTS) challenges.

  Python

  •

  Apache License 2.0

  •5•34•3•1•Updated Aug 7, 2025Aug 7, 2025

• PeTu

  Public
  pediatric brain tumor segmentation models

  tumormrisegmentation+ 2pediatricbrain

  Python

  •1•3•0•0•Updated Aug 6, 2025Aug 6, 2025

• tutorials

  Public
  BrainLes tutotrials

  pipelinesmribrain+ 1pathology

  Jupyter Notebook

  •

  Apache License 2.0

  •2•11•3•0•Updated Jul 25, 2025Jul 25, 2025

• .github

  Public
  Apache License 2.0

  •1•1•0•0•Updated Jul 25, 2025Jul 25, 2025

• auxiliary

  Public
  Python

  •

  Apache License 2.0

  •3•1•1•0•Updated Jul 25, 2025Jul 25, 2025

• AURORA

  Public
  Segmentation models for cancer metastasis in brain MR

  metastasismrisegmentation

  Python

  •

  Apache License 2.0

  •2•8•0•0•Updated Jun 10, 2025Jun 10, 2025

• GlioMODA

  Public
  brainglioma

  Python

  •1•4•1•0•Updated Apr 28, 2025Apr 28, 2025

• modsort

  Public
  manual sorting GUI for identifying MR sequences

  mriidentificationsequence+ 2mrmodality

  Vue

  •

  Apache License 2.0

  •0•4•1•0•Updated Apr 22, 2025Apr 22, 2025

• HD-BET

  Public
  Python

  •

  Apache License 2.0

  •1•1•0•0•Updated Apr 17, 2025Apr 17, 2025

• brainles-template

  Public template
  Template for new BrainLes repositories

  Python

  •1•0•0•0•Updated Apr 16, 2025Apr 16, 2025

• deep_quality_estimation

  Public
  Quality estimation for BraTS glioma segmentation models

  mrisegmentationbrain+ 1glioma

  Python

  •0•3•0•0•Updated Nov 27, 2024Nov 27, 2024

• eReg

  Public archive
  TODO

  Python

  •

  Apache License 2.0

  •0•1•6•0•Updated Apr 16, 2024Apr 16, 2024

• BrainLes

  Public
  0•0•0•0•Updated Mar 7, 2024Mar 7, 2024