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    14 repositories

    • qspy

      Public
      QSPy: Quantitative Systems Pharmacology in Python
      Python
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Jul 29, 2025Jul 29, 2025

    • pysb-pkpd

      Public
      PySB add-on providing domain-specific macros and models for empirical and mechanistic PK/PD modeling.
      Jupyter Notebook
      •
      BSD 2-Clause "Simplified" License
      •6•0•0•0•Updated Jul 11, 2025Jul 11, 2025

    • pysb-units

      Public
      PySB add-on providing utilities to add units to models and perform dimensional analysis.
      systems-biologypysbphysics-based-simulationpkpd-modellingmechanistic-modelingreaction-modelspysb-modeling
      Python
      •
      BSD 2-Clause "Simplified" License
      •0•1•3•0•Updated Jul 5, 2025Jul 5, 2025

    • qspy-cookiecutter

      Public
      Cookiecutter recipe for QSPy model projects
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 25, 2025Jun 25, 2025

    • pysb-fit

      Public
      Tools to help automate PySB model calibration using a style similar to scikit-learn models.
      BSD 2-Clause "Simplified" License
      •0•0•1•0•Updated Jun 16, 2025Jun 16, 2025

    • pyNCA

      Public
      Non-compartmental PK analysis in Python
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Mar 25, 2025Mar 25, 2025

    • aurora-pkpd

      Public
      Open Python Web App for Pharmcological Modeling and Analysis
      pharmacometricsnoncompartmental-analysispharmacokineticspharmacodynamicscompartmental-modelspkpd
      Python
      •
      BSD 2-Clause "Simplified" License
      •0•1•12•0•Updated Oct 25, 2024Oct 25, 2024

    • radioligand-therapy-model

      Public
      Semi-mechanistic PK/PD model of radioligand therapy implemented in PySB with pysb-pkpd and pysb-units.
      nuclear-medicinepkpdcancer-modelspkpd-modellingpysb-modelingradioligand-therapypysb-unitspysb-pkpd
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 17, 2024Oct 17, 2024

    • GAlibrate

      Public
      Parameter estimation and model calibration using Genetic Algorithm optimization in Python.
      Jupyter Notebook
      •
      MIT License
      •4•0•0•0•Updated Jul 25, 2024Jul 25, 2024

    • pharmacodynamic-response-models

      Public
      Collection of pharmacodynamic response models, including dose-response, inhibitor-response, and various receptor-response models that can be fit to response data.
      Python
      •
      MIT License
      •2•0•0•0•Updated Jul 22, 2024Jul 22, 2024

    • .github

      Public
      0•0•0•0•Updated Jul 16, 2024Jul 16, 2024

    • pysb-jlsimulator

      Public
      Julia-based simulator(s) for PySB models using tools like Catalyst.jl and PyJulia.
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Jun 23, 2024Jun 23, 2024

    • aurora-biomodeling-app

      Public
      Python-based web app for biomodel construction, simulation, and analysis.
      MIT License
      •0•0•0•0•Updated Mar 19, 2024Mar 19, 2024

    • PySB-Models

      Public
      A repository of mathematical models of biological systems that are encoded using PySB.
      MIT License
      •1•0•0•0•Updated Jun 7, 2023Jun 7, 2023