Repositories list

• lego_analysis

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Jun 20, 2025Jun 20, 2025

• napari_lattice

  Public
  Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for data from the Zeiss lattice lightsheet microscope.

  pythonlatticemicroscopy+ 7deconvolutionzeissimage-analysis-and-processingdeskewinglightsheetnaparioblique-plane

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •4•13•29•9•Updated May 27, 2025May 27, 2025

• Malaria_gametocyte_detection

  Public
  Training a Yolo network to classify stages of malarial gametocyte development

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Jan 15, 2025Jan 15, 2025

• tonkin_lab

  Public
  Code for Tonkin Lab data

  ImageJ Macro

  •0•0•0•0•Updated Sep 20, 2024Sep 20, 2024

• jupyter_milton

  Public
  Repo for notebooks and documents for jupyter to Milton job submission

  Jupyter Notebook

  •0•1•0•0•Updated Apr 23, 2024Apr 23, 2024

• HDAB_counts_HPC

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jun 2, 2023Jun 2, 2023

• nexflow_halo_stitch

  Public
  Python

  •0•2•0•0•Updated May 19, 2023May 19, 2023

• QuPath_scripts

  Public
  A set of QuPath scripts for various pre-processing/analysis tasks

  Groovy

  •

  GNU General Public License v3.0

  •1•1•0•0•Updated Aug 9, 2022Aug 9, 2022

• napari-workflows

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •10•1•0•0•Updated Feb 16, 2022Feb 16, 2022

• pythonUtils

  Public
  Jupyter Notebook

  •

  MIT License

  •0•2•0•0•Updated Nov 15, 2021Nov 15, 2021