Bioconductor

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332 repositories

status.bioconductor.org
Public
Status page for Bioconductor based on cstate hugo site
1•0•0•0•Updated Aug 6, 2025Aug 6, 2025
S4Vectors
Public
Foundation of vector-like and list-like containers in Bioconductor
bioconductor-package core-package
R
•22•18•24•2•Updated Aug 5, 2025Aug 5, 2025
support.bioconductor.org
Public
support site code base. Based on Biostars.
Python
•
MIT License
•2•2•19•0•Updated Aug 5, 2025Aug 5, 2025
SplicingGraphs
Public
Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them
bioconductor-package
R
•1•2•0•0•Updated Aug 5, 2025Aug 5, 2025
BiocStyle
Public
Issues and pull requests for BiocStyle should go here.
bioconductor-package core-package
R
•20•13•31•4•Updated Aug 4, 2025Aug 4, 2025
AnVIL
Public
Interact with AnVIL and Leonardo projects
R
•9•8•12•0•Updated Aug 4, 2025Aug 4, 2025
BiocCheck
Public
core-services bioconductor-package
R
•27•9•9•0•Updated Aug 4, 2025Aug 4, 2025
bioconductor_docker
Public
Docker Containers for Bioconductor
docker-image bioconductor bioconductor-containers
Dockerfile
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Artistic License 2.0
•31•83•16•4•Updated Aug 4, 2025Aug 4, 2025
shinybiocloader
Public
CSS
•0•0•0•0•Updated Aug 1, 2025Aug 1, 2025
EuroBioC2025
Public
Website of the European Bioconductor Conference 2025
conference bioconductor european
CSS
•4•2•0•0•Updated Aug 1, 2025Aug 1, 2025
bioc-common-python
Public
Python
•2•1•0•0•Updated Aug 1, 2025Aug 1, 2025
packagebuilder
Public
JavaScript
•7•5•1•0•Updated Aug 1, 2025Aug 1, 2025
bioconductor-training
Public
Bioconductor teaching and education committee
training education teaching bioconductor committee
HTML
•26•49•7•0•Updated Jul 31, 2025Jul 31, 2025
CSAMA-labs
Public
laboratory materials for the Bressanone course
HTML
•5•2•1•1•Updated Jul 31, 2025Jul 31, 2025
BBS
Public
The Bioconductor Build System
Shell
•12•11•54•3•Updated Jul 31, 2025Jul 31, 2025
BiocPkgDash
Public
R
•0•0•0•0•Updated Jul 30, 2025Jul 30, 2025
BiocStickers
Public
Stickers for some Bioconductor packages - feel free to contribute and/or modify.
bioconductor stickers
R
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Other
•114•130•13•0•Updated Jul 30, 2025Jul 30, 2025
GenomicFeatures
Public
Query the gene models of a given organism/assembly
bioconductor-package core-package
R
•11•27•8•1•Updated Jul 29, 2025Jul 29, 2025
AnnotationDbi
Public
Manipulation of SQLite-based annotations in Bioconductor
bioconductor-package core-package
R
•10•9•4•2•Updated Jul 29, 2025Jul 29, 2025
BiocGenerics
Public
Defines many S4 generic functions used in Bioconductor
bioconductor-package core-package
R
•8•12•0•0•Updated Jul 28, 2025Jul 28, 2025
Rsamtools
Public
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
bioconductor-package core-package
R
•
Other
•28•28•14•2•Updated Jul 28, 2025Jul 28, 2025
GenomicAlignments
Public
Representation and manipulation of short genomic alignments
bioconductor-package core-package
R
•15•11•8•3•Updated Jul 28, 2025Jul 28, 2025
BiocAsia2025
Public
CSS
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MIT License
•0•0•0•0•Updated Jul 28, 2025Jul 28, 2025
AnnotationHub
Public
Client for the Bioconductor AnnotationHub web resource
core-package u24ca289073
R
•16•19•5•0•Updated Jul 25, 2025Jul 25, 2025
quarto-extensions
Public
CSS
•0•0•0•0•Updated Jul 23, 2025Jul 23, 2025
BiocArchive
Public
Match the CRAN archive repository with a previous Bioconductor release
R
•0•0•0•0•Updated Jul 23, 2025Jul 23, 2025
biocEDAM
Public
preliminary investigation of biocViews in relation to EDAM ontology
R
•4•3•5•2•Updated Jul 23, 2025Jul 23, 2025
BiocFileCache
Public
Manage Files Across Sessions
core-package u24ca289073
R
•10•13•10•0•Updated Jul 23, 2025Jul 23, 2025
code.bioconductor.org
Public
Tools for browsing and searching the code behind Bioconductor packages
code-search bioconductor r-packages
CSS
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MIT License
•0•0•0•0•Updated Jul 22, 2025Jul 22, 2025
GenomeInfoDb
Public
Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
bioconductor-package core-package
R
•13•32•5•0•Updated Jul 21, 2025Jul 21, 2025