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@AAGI-AUS Analytics for the Australian Grains Industry (AAGI)

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    26 repositories

    • AAGIOfficeTemplates

      Public
      Microsoft Word and PowerPoint templates for AAGI documents and presentations.
      0•0•0•0•Updated Nov 10, 2025Nov 10, 2025

    • PacB-flow

      Public
      🌊 🔗 PacBio long reads assebly workflow based on Nextflow
      Nextflow
      •
      Apache License 2.0
      •0•0•1•0•Updated Oct 27, 2025Oct 27, 2025

    • bayesreml

      Public
      Flexible Bayesian framework for ASReml-compatible inference and prediction
      R
      •
      GNU General Public License v3.0
      •0•2•1•0•Updated Oct 25, 2025Oct 25, 2025

    • AAGISurvey

      Public
      Tools for working with AAGI Surveys for Collecting Data from Service and Support Partners
      r
      R
      •
      Other
      •0•0•0•0•Updated Oct 2, 2025Oct 2, 2025

    • aagi-aus.r-universe.dev

      Public
      AAGI-AUS R-Universe Packages
      Other
      •0•0•0•0•Updated Sep 19, 2025Sep 19, 2025

    • rippo

      Public
      Helper functions that ease preparing the AAGI-CU IPPO register.
      R
      •
      Other
      •1•0•0•0•Updated Sep 2, 2025Sep 2, 2025

    • CBADASReml

      Public
      A collection of helper functions for small-plot trial analysis using ASReml-R
      ragricultureagriculture-researchagricultural-modellingagriculture-dataagricultural-analysis
      R
      •
      GNU General Public License v3.0
      •0•1•6•0•Updated Aug 22, 2025Aug 22, 2025

    • AAGIQuarto

      Public
      A Quarto Extension for AAGI Themed Products, e.g., PDF, Word, revealjs, and PPT for AAGI staff
      literate-programmingquartoquarto-extension
      TeX
      •
      MIT License
      •3•4•3•0•Updated Jul 30, 2025Jul 30, 2025

    • AAGIThemes

      Public
      AAGI Branding for R Graphical and Tabular Outputs
      R
      •
      GNU General Public License v3.0
      •1•1•4•0•Updated Jul 28, 2025Jul 28, 2025

    • AAGIPalettes

      Public
      AAGI Colours and Colour Palettes for R
      R
      •
      Other
      •0•3•0•0•Updated Jul 28, 2025Jul 28, 2025

    • Nextflow-bioseminar

      Public
      Nextflow seminar PowerPoint presentation highlighting the power of workflow automation and the role of Nextflow in advancing reproducible research.
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Jul 24, 2025Jul 24, 2025

    • AAGI-HTML-Draft

      Public
      An HTML template repository, which enables AAGI staff to create HTML reports, compliant with AAGI templates. Still in development
      CSS
      •
      Other
      •0•0•1•0•Updated Jul 24, 2025Jul 24, 2025

    • AAGIQuartoExtra

      Public
      Facilitates the Creation of AAGI Quarto Documents
      R
      •
      Other
      •0•0•0•0•Updated Jul 22, 2025Jul 22, 2025

    • AAGI-Style-Guide-and-Logos

      Public
      The AAGI Logo and Comms Style Guide and Logo Files
      0•0•10•0•Updated Jul 22, 2025Jul 22, 2025

    • Repositories-Guidelines

      Public
      Provides guidance on the current state of the github repos and creating, managing and approving repositories and making changes to them, and instructions/recommendations on licencing.
      Creative Commons Attribution 4.0 International
      •0•0•5•0•Updated Jul 22, 2025Jul 22, 2025

    • nert

      Public
      An API Client for TERN Data Resources
      R
      •
      Other
      •0•2•1•0•Updated Jul 17, 2025Jul 17, 2025

    • .github

      Public
      0•0•0•0•Updated Jul 17, 2025Jul 17, 2025

    • AAGITemplates

      Public
      Rmarkdown, LaTeX, and Knitr reporting templates for AAGI staff.
      BibTeX Style
      •
      MIT License
      •4•8•11•0•Updated Jul 16, 2025Jul 16, 2025

    • nectar-vm-setup

      Public
      Step-by-step tutorial - create your first instance on Nectar
      Other
      •0•0•0•0•Updated Jul 1, 2025Jul 1, 2025

    • shiny-template

      Public
      R
      •
      MIT License
      •1•0•0•0•Updated Jun 6, 2025Jun 6, 2025

    • NanoAssem-flow

      Public
      Pipeline for QC and assembly of ONT reads
      Nextflow
      •
      Apache License 2.0
      •1•0•2•0•Updated May 29, 2025May 29, 2025

    • EnvirData_tools_list

      Public
      A simple repo sharing a list of environmental data (e.g. climate and soils) acquisition tools
      0•2•1•0•Updated May 5, 2025May 5, 2025

    • qcflow-rnaseq

      Public
      ✅ 🚨 QC and alignement pipeline for RNA-seq reads
      Nextflow
      •
      Apache License 2.0
      •0•0•4•0•Updated May 3, 2025May 3, 2025

    • InPlotSampling

      Public
      A package for ranked set sampling and statistical inference
      R
      •
      Other
      •0•4•2•0•Updated Feb 14, 2025Feb 14, 2025

    • Trial_Protocol_Best_Practices

      Public
      A basic introduction to trial protocols and data collection for industry partners
      CSS
      •
      Creative Commons Zero v1.0 Universal
      •0•1•1•0•Updated Nov 6, 2024Nov 6, 2024

    • Intro_to_Trial_Design

      Public
      A basic introduction to trial design for industry partners
      statisticsstatistics-coursestatistics-learningagricultural-researchtrial-design
      CSS
      •
      Creative Commons Zero v1.0 Universal
      •0•1•1•0•Updated Oct 28, 2024Oct 28, 2024