Open Targets Pathways API

Open Targets Pathways API is a specialized API service

Requirements

• Python 3.8+
• FastAPI for API management
• UV for dependency and environment management
• Docker for deployment

Setup and Installation

1. Clone the repository:

   git clone git@github.com:opentargets/pathways-api.git
   cd pathways-api

2. Install dependencies using UV:

   uv sync

3. Run development server:

   uv run fastapi dev

Usage

• Access Swagger documentation at http://localhost:8000/docs.
• Access ReDoc documentation at http://localhost:8000/redoc.

Building production-ready bundle with docker

Build your image:

$ docker build . -t <your username>/ot-ai-api

Run your image: For running the image you need to map the port to whatever you wish to use on your host. In this example, we simply map port 49160 of the host to port 8080 of the Docker.

Youl will also need to provide your own OpenAI key via the environment variable OPENAI_TOKEN.

$ docker run -p 49160:8080 -e "OPENAI_TOKEN=XXXXXXXXXXX" -d <your username>/ot-ai-api

Copyright

Copyright 2014-2024 EMBL - European Bioinformatics Institute, Genentech, GSK, MSD, Pfizer, Sanofi and Wellcome Sanger Institute

This software was developed as part of the Open Targets project. For more information please see: http://www.opentargets.org

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at

http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.