Implement comprehensive OMERO upload with timelapse/z-stack support and robust threading#150

Draft

Copilot wants to merge 17 commits intomasterfrom

copilot/fix-149

Commits on Aug 29, 2025

Initial plan
Copilot
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Add OMERO uploader infrastructure and OMEWriter integration

Copilot
and
openuc2-gmbh
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Complete OMERO upload integration with documentation and examples

Copilot
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openuc2-gmbh
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ADding installation details omero
beniroquai
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Add OMERO upload support to startWellplateExperiment

Copilot
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openuc2-gmbh
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further testing
beniroquai
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Fix OMERO dataset validation error by checking dataset existence before linking

Copilot
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openuc2-gmbh
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first connecting before uploading, otherwise, we will take images eventhough the omero store is not available yet
beniroquai
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Fix ROMIO backend row buffering for OMERO upload

Copilot
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openuc2-gmbh
committed

Commits on Aug 30, 2025

Commits on Sep 1, 2025

Commits on Sep 2, 2025

fix democontroller xy
beniroquai
committed

Commits on Sep 3, 2025

Add CSV logging for focus measurements
beniroquai
committed

Commits on Sep 8, 2025

Refactor FocusLockController for cached Z position tracking
beniroquai
committed