ADRIAIndicators.jl

ADRIAIndicators provides a set of standard metrics for summarizing the state of reef ecological model outputs.

Usage

Each metrics has an option to perform the computation in place.

using ADRIAIndicators: relative_juveniles, relative_juveniles!

# Raw model coral cover outputs with dimensions [timesteps ⋅ groups ⋅ sizes ⋅ locations]
raw_model_cover::Array{T,4} = ...
# Juveniles mask with dimensions [sizes]
is_juvenile::Vector{Bool} = ...

# Calculate and allocate new array for metric
rel_juveniles = relative_juveniles(raw_model_cover, is_juvenile)

# Perform the computation inplace.
rel_juveniles = zeros(Float64, n_timesteps, n_locations)
relative_juveniles(raw_model_cover, is_juvenile, rel_juveniles)

Available Metrics

• Relative/Absolute Cover

• Relative/Absolute Shelter Volume

• Relative/Absolute Juveniles

• Juvenile Indicator

• Coral Diversity

• Coral Evenness

• Reef Condition Index

• Reef Biodiversity Condition Index

• Reef Tourism Index

• Reef Fish Index

Building Documentation

The documentation is not currently hosted online but can be built as follows.

cd docs

julia --project=. make.jl

finally, open index.html in the docs/build directory.