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Direct GitHub Integration from PathVisio to WikiPathways

Difficulty: Medium

GitHub

GPML

GUI

Java

PathVisio

Size: 175h

WikiPathways

Status: Open.

#264 In nrnb/GoogleSummerOfCode;

· mkutmon opened on Mar 20, 2025

Curation Support Tools for the Creation of a Lung Cancer Disease Map

Difficulty: Medium

LLM

Python

Size: 175h

Status: Open.

#262 In nrnb/GoogleSummerOfCode;

· cannin opened on Feb 28, 2025

Refactor Cytosnap to use Playwright

Canvas

Cytoscape.js

Difficulty: Easy

JavaScript

Size: 175h

Status: Open.

#254 In nrnb/GoogleSummerOfCode;

· maxkfranz opened on Jan 27, 2025

Web-Based Interactive Visualization to integrate Geneset Analysis with DBRetina

CSS

Cytoscape.js

Difficulty: Medium

HTML

JavaScript

Size: 175h

Status: Open.

#251 In nrnb/GoogleSummerOfCode;

· MoHelmy opened on Jan 25, 2025

Integrating DBRetina with an LLM-Powered Chatbot for Genomic Data Exploration

C++

CSS

Difficulty: Hard

HTML

LLM

Machine learning

Size: 175h

Status: Open.

#250 In nrnb/GoogleSummerOfCode;

· MoHelmy opened on Jan 25, 2025

Website for VCellDB.org

CSS

Difficulty: Medium

HTML

Java

JavaScript

JSON

REST

Size: 175h

VCell

web services

XML

Status: Open.

#249 In nrnb/GoogleSummerOfCode;

· vcellmike opened on Jan 23, 2025

COBRAxy: spatial and single-cell metabolic modelling

Difficulty: Medium

Galaxy

Python

Size: 175h

Status: Open.

#248 In nrnb/GoogleSummerOfCode;

· kiaradamiani opened on Jan 22, 2025

Improving Cytoscape.js layout utilities

Cytoscape.js

Difficulty: Hard

JavaScript

Size: 175h

Status: Open.

#247 In nrnb/GoogleSummerOfCode;

· ugurdogrusoz opened on Jan 22, 2025

Assisting the creation of SBGN diagrams using large language models (LLMs)

CSS

Difficulty: Medium

HTML

JavaScript

LLM

SBGN

Size: 175h

Status: Open.

#245 In nrnb/GoogleSummerOfCode;

· hasanbalci opened on Jan 10, 2025

Getting the complexity score from SBOL files to streamline DNA synthesis using standards

Difficulty: Medium

Python

SBOL

Size: 175h

Status: Open.

#241 In nrnb/GoogleSummerOfCode;

· Gonza10V opened on Mar 25, 2024

Cytoscape Automated Testing Suite for Biomedical Visualization

Cytoscape

Difficulty: Medium

JavaScript

Python

REST

Size: 175h

Status: Open.

#233 In nrnb/GoogleSummerOfCode;

· jingjingbic opened on Jan 14, 2024

Large Network Renderer

Cytoscape

Difficulty: Medium

Hierarchical network

HiView

JavaScript

JSON

NDEx

OpenGL

Size: 175h

Status: Open.

#229 In nrnb/GoogleSummerOfCode;

· jingjingbic opened on Jan 12, 2024