Improve Makefile documentation for command flag handling #377
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Description
I’ve cleaned up and rewritten the comments in the Makefile section that defines individual command flags.
The goal was to make it easier for others to understand what this part of the file does and why the flags are set individually.
The functionality hasn’t changed — only the explanation and wording. I also replaced the “ugly hack” phrasing with a more descriptive note that explains the reasoning behind it.
Notes
No behavior change
Just documentation to make file beginner friendly