What's Changed
- bumpt dev branch version by @fmalmeida in #447
- Json schema improvements by @abartlett004 in #453
- Change simpleaf protocol name from 10xv4 to 10xv4-3p by @milos7250 in #452
- updated --cellranger_index docs to point out that the base index directory is needed by @nick-youngblut in #458
- Fix: Support for
--aligner cellrangerarcby @matbonfanti in #441 - Add ruff to pre-commit checks by @grst in #464
- Update cellranger modules to use tool v9 by @fmalmeida in #467
- Fix refgenome error by @nictru in #469
- Update protocol documentation by @nictru in #459
- Important! Template update for nf-core/tools v3.2.1 by @nf-core-bot in #466
- Add the
acceleratorprocess directive to theprocess_gpulabel co… by @stevekm in #477 - Enable processing of on chip multiplexing sequence data by @fmalmeida in #482
- Implement skip_multiqc parameter available in nextflow.config by @Mridul-Chaudhary in #479
- Important! Template update for nf-core/tools v3.3.2 by @nf-core-bot in #474
- Refactor iGenomes handling to expose params object pipeline-wide by @LeonHafner in #483
- Fix nf test version by @fmalmeida in #487
- Bump version 4.1.0 for release by @fmalmeida in #484
- exclude conda profile by @fmalmeida in #489
- Important! Template update for nf-core/tools v3.4.1 by @nf-core-bot in #496
- Attempt to fix awsfulltest by @grst in #499
- Release version 4.1.0 of pipeline by @fmalmeida in #485
See also the CHANGELOG.
New Contributors
- @abartlett004 made their first contribution in #453
- @milos7250 made their first contribution in #452
- @matbonfanti made their first contribution in #441
- @stevekm made their first contribution in #477
- @Mridul-Chaudhary made their first contribution in #479
- @LeonHafner made their first contribution in #483
Full Changelog: 4.0.0...4.1.0