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Fix bug with probeset and index mismatch when using cellranger multi with a probeset and without a pre-built index #29

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Fix bug with probeset and index mismatch when using cellranger multi with a probeset and without a pre-built index

Fix bug with probeset and index mismatch when using cellranger multi with a probeset and without a pre-built index #29

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.github/workflows/release-announcements.yml at 759310d
name: release-announcements

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(Line: 18, Col: 13): The identifier 'get_topics' may not be used more than once within the same scope.
# Automatic release toot and tweet anouncements
on:
release:
types: [published]
workflow_dispatch:
jobs:
toot:
runs-on: ubuntu-latest
steps:
- name: get topics and convert to hashtags
id: get_topics
run: |
echo "topics=$(curl -s https://nf-co.re/pipelines.json | jq -r '.remote_workflows[] | select(.full_name == "${{ github.repository }}") | .topics[]' | awk '{print "#"$0}' | tr '\n' ' ')" | sed 's/-//g' >> $GITHUB_OUTPUT
- name: get description
id: get_topics
run: |
echo "description=$(curl -s https://nf-co.re/pipelines.json | jq -r '.remote_workflows[] | select(.full_name == "${{ github.repository }}") | .description' >> $GITHUB_OUTPUT
- uses: rzr/fediverse-action@master
with:
access-token: ${{ secrets.MASTODON_ACCESS_TOKEN }}
host: "mstdn.science" # custom host if not "mastodon.social" (default)
# GitHub event payload
# https://docs.github.com/en/developers/webhooks-and-events/webhooks/webhook-events-and-payloads#release
message: |
Pipeline release! ${{ github.repository }} v${{ github.event.release.tag_name }} - ${{ github.event.release.name }}!
${{ steps.get_topics.outputs.description }}
Please see the changelog: ${{ github.event.release.html_url }}
${{ steps.get_topics.outputs.topics }} #nfcore #openscience #nextflow #bioinformatics
bsky-post:
runs-on: ubuntu-latest
steps:
- uses: zentered/bluesky-post-action@6461056ea355ea43b977e149f7bf76aaa572e5e8 # v0.3.0
with:
post: |
Pipeline release! ${{ github.repository }} v${{ github.event.release.tag_name }} - ${{ github.event.release.name }}!
Please see the changelog: ${{ github.event.release.html_url }}
env:
BSKY_IDENTIFIER: ${{ secrets.BSKY_IDENTIFIER }}
BSKY_PASSWORD: ${{ secrets.BSKY_PASSWORD }}
#