BAM_MARKDUPLICATES_PICARD => incorrect take docs

[nick-youngblut]

Have you checked the docs?

• nf-core website: troubleshooting
• nf-core modules documentation

Description of the bug

Current:

workflow BAM_MARKDUPLICATES_PICARD {

    take:
    ch_bam   // channel: [ val(meta), path(bam) ]
    ch_fasta // channel: [ path(fasta) ]
    ch_fai   // channel: [ path(fai) ]

However, the input for PICARD_MARKDUPLICATES is:

    input:
    tuple val(meta), path(bam)
    tuple val(meta2), path(fasta)
    tuple val(meta3), path(fai)

...so the docs should be:

    take:
    ch_bam   // channel: [ val(meta), path(bam) ]
    ch_fasta // channel: [ val(meta), path(fasta) ]
    ch_fai   // channel: [ val(meta), path(fai) ]

Command used and terminal output

Relevant files

No response

System information

No response

[SPPearce]

Feel free to make a PR to fix this.

[nick-youngblut]

It's an addition of just a few characters, so I was thinking that this issue would be wrapped into a larger "docs update" PR, but sure, I can create the PR.

[SPPearce]

Unless you think there are more changes that need updating, might as well get it done now and then it actually happens.

[nick-youngblut]

Done: #8431.
I'm looking forward for these little PRs to be fully AI automated.