Merge pull request #288 from ToonRosseel/process_beds #141

	name: build docs
	on:
	push:
	branches:
	- main
	- dev
	permissions:
	contents: write
	jobs:
	deploy:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3
	with:
	fetch-depth: 0 # fetch all commits/branches

	- uses: actions/setup-python@v4
	with:
	python-version: 3.x

	- name: Fetch current date
	id: date
	run: echo "cache_id=$(date --utc '+%V')" >> $GITHUB_OUTPUT

	- name: Read pipeline version from .nf-core.yml
	uses: nichmor/minimal-read-yaml@v0.0.2
	id: read_yml
	with:
	config: ${{ github.workspace }}/.nf-core.yml

	- name: Parse version
	id: version
	run: \|
	[[ ${{ steps.read_yml.outputs['template.version'] }} == "dev" ]] && pipeline_version="dev" \|\| pipeline_version=${{ steps.read_yml.outputs['template.version'] }}
	echo "version=$pipeline_version" >> $GITHUB_OUTPUT

	- name: Setup git user
	run: \|
	git config --global user.name "${{github.actor}}"
	git config --global user.email "${{github.actor}}@users.noreply.github.com"
	- uses: actions/cache@v3
	with:
	key: mkdocs-material-${{ steps.date.outputs.cache_id }}
	path: .cache
	restore-keys: \|
	mkdocs-material-

	- name: Install dependencies
	run: pip install mkdocs-material pymdown-extensions pillow cairosvg mike

	- name: Build dev docs
	if: ${{ github.head_ref \|\| github.ref_name }} == 'dev'
	run: \|
	mike deploy --push dev

	- name: Build production docs
	if: ${{ github.head_ref \|\| github.ref_name }} == 'main'
	run: \|
	mike deploy --push --update-aliases ${{ steps.version.outputs.version }} latest

	- name: Set default docs
	run: mike set-default --push latest

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