gapmm2 v25.4.13

• Discovered a segmentation fault derived from mappy, based on the repo it looks like this has been brought up but not fixed. So as a patch, this release will run minimap2 binary instead of mappy if it is installed in the PATH.
• Results are now streamed instead of stored in memory.

Full Changelog: v25.4.5...v25.4.13

gapmm2 v25.4.5

This release adds tests and some linting to the codebase.

Full Changelog: v23.11.3...v25.4.5

gapmm2 v23.11.3

• change to CalVer versioning
• bug fix for edge case alignment

gapmm2 v0.2.0

• supports output in GFF3 format as well as PAF
• some fixes to the --version flag and readme
• output is now sorted by contig and then contig start position

gapmm2 v0.1.1

• add option to control terminal search space, -i, --max_intron
• fix off-by-one bug on left minus alignments in cs flag

gapmm2 v0.1.0

Initial release of gapmm2.