Enable local use via multi devcontainer #533
Closed
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Wrong file name in code example of point 4. Typo fix (This a -> This *is* a)
* Domain-specific mini-course demonstrating how to apply learnings from Hello Nextflow to RNAseq processing * Includes a simple RNAseq processing pipeline that reuses the genome and read data from the deprecated `hands-on` training. * Implements the method described in https://www.bioinformatics.babraham.ac.uk/training/RNASeq_Course/Analysing%20RNA-Seq%20data%20Exercise.pdf --------- Co-authored-by: Ken Brewer <kenibrewer@users.noreply.github.com>
✅ Deploy Preview for nextflow-training ready!
To edit notification comments on pull requests, go to your Netlify site configuration. |
Co-authored-by: Jonathan Manning <pininforthefjords@gmail.com>
Training small fixes
Minor fixes and improvements to the index and orientation pages
Add modules component to 'Nextflow for Genomics'
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
This needs to be merged after #513, once changes are reconciled. But we can enable local devcontainers this way.
Two devcontainers files, one for Codespaces, one for local.
non-codespaces ('local') operation involves mirroring paths from host, and symlinking to create the /workspaces location for harmony with the materials. We then set all terminals to open in that path.
Symlinked the codespaces version so it's the default.
Local operation would be a little more clunky, but would now work. I've checked that the DoD functionality is restored.