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Description
Bug report
This seems to be the same problem as issue #2563, but I am encountering it in 24.11.0-edge build 5929. Copying data over to the same container as work / output folder resolved the problem.
Expected behavior and actual behavior
- nextflow should be able to stage data from separate container
- it can't
Steps to reproduce the problem
Working on this, will update issue when I have it ready.
Program output
From .command.log
in work dir:
Unable to download path: https://omicsdata.blob.core.windows.net/study-data/{stuff}.fastq.gz
Unable to download path: https://omicsdata.blob.core.windows.net/study-data/{stuff}.fastq.gz
Environment
- Nextflow version: 24.11.0-edge build 5929
- Java version: [?]
- Operating system: Linux
- Bash version: (use the command
$SHELL --version
)
Additional context
(Add any other context about the problem here)